ggKbase home page

OR_08142018_10m_0_1um_scaffold_15

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_15_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(307..744)
DNA (438bp) protein (146aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_08142018_10m_0_1um_scaffold_15_2
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(944..2023)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=3 Tax=Elizabethkingia RepID=L8K418_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO10194.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
membrane protein
OR_08142018_10m_0_1um_scaffold_15_3
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2227..2850)
DNA (624bp) protein (208aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSS9_LEAB4
filamentation induced by camp protein fic
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ADQ15929.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
OR_08142018_10m_0_1um_scaffold_15_4
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2843..3064)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RST0_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ15930.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
OR_08142018_10m_0_1um_scaffold_15_5
unknown

Not on your lists

comp(3102..3500)
DNA (399bp) protein (133aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_15_6
unknown

Not on your lists

comp(3534..3773)
DNA (240bp) protein (80aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_15_7
unknown

Not on your lists

comp(3776..3895)
DNA (120bp) protein (40aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_15_8
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4025..5005)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029B4C7C
Uncharacterized protein {ECO:0000313|EMBL:AKC17922.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_15_9
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5012..5941)
DNA (930bp) protein (310aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
mdh; malate dehydrogenase (NAD) (EC:1.1.1.37)
Malate dehydrogenase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=MDH_CYTH3
OR_08142018_10m_0_1um_scaffold_15_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5967..6443)
DNA (477bp) protein (159aa)
Ferritin Dps family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDR2_CHIPD
ferritin Dps family protein
Ferritin Dps family protein {ECO:0000313|EMBL:ACU59641.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
OR_08142018_10m_0_1um_scaffold_15_11
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6475..7461)
DNA (987bp) protein (329aa)
membrane protein n=1 Tax=Pedobacter agri RepID=UPI00029B4173
Membrane protein {ECO:0000313|EMBL:AKC18016.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_15_12
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7537..8430)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003751805
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:KIX22168.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
OR_08142018_10m_0_1um_scaffold_15_13
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8881..9798)
DNA (918bp) protein (306aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K0E5_9FLAO
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJL73605.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
AraC family transcriptional regulator
OR_08142018_10m_0_1um_scaffold_15_14
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9862..10728)
DNA (867bp) protein (289aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C7P2_SPHS2
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADZ81375.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
OR_08142018_10m_0_1um_scaffold_15_15
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11288..13702)
DNA (2415bp) protein (805aa)
Uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J6C5_9FLAO
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
OR_08142018_10m_0_1um_scaffold_15_16
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13719..14147)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TER2_NIAKG
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
OR_08142018_10m_0_1um_scaffold_15_17
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14218..15483)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI0003481ECA
Histidine kinase {ECO:0000313|EMBL:KIA94449.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
integral membrane sensor signal transduction histidine kinase
OR_08142018_10m_0_1um_scaffold_15_18
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15476..16153)
DNA (678bp) protein (226aa)
transcriptional regulator n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034DA88D
two component transcriptional regulator, winged helix family
Tax=BJP_08E140C01_Flavobacteriales_35_8
OR_08142018_10m_0_1um_scaffold_15_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16657..17298)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO43127.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
OR_08142018_10m_0_1um_scaffold_15_20
Zhouia amylolytica, Zhouia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17529..18191)
DNA (663bp) protein (221aa)
Uncharacterized protein {ECO:0000313|EMBL:ETN94337.1}; TaxID=1286632 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zhouia.;" source="Zhouia amylolytica AD3.;"
OR_08142018_10m_0_1um_scaffold_15_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18402..18896)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003612D7A
integrase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_08142018_10m_0_1um_scaffold_15_22
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19591..20049
DNA (459bp) protein (153aa)
Mobile mystery protein A n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KU50_SOLCM
mobile mystery protein A
Mobile mystery protein A {ECO:0000313|EMBL:AFD07030.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
OR_08142018_10m_0_1um_scaffold_15_23
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

20040..20636
DNA (597bp) protein (199aa)
Filamentation induced by cAMP protein Fic n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YP18_9CHLB
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:EAT58028.1}; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
mobile mystery protein B
OR_08142018_10m_0_1um_scaffold_15_24
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20876..21331)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZVK1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETZ22789.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_15_25
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21328..21522)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FSU2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI94066.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
OR_08142018_10m_0_1um_scaffold_15_26
unknown

Not on your lists

comp(21732..21896)
DNA (165bp) protein (55aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_15_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21905..22357)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W6S2_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96133.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
OR_08142018_10m_0_1um_scaffold_15_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(23044..23820)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHL1_CHIPD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_08142018_10m_0_1um_scaffold_15_29
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(23827..26550)
DNA (2724bp) protein (908aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PHL0_CHIPD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
OR_08142018_10m_0_1um_scaffold_15_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26668..29910)
DNA (3243bp) protein (1081aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UQY9_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:EES49104.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hypothetical protein
Displaying items 1-30 of 126 in total

View Taxonomy