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OR_08142018_10m_0_1um_scaffold_1336

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_1336_1
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..269)
DNA (267bp) protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KDN96867.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
OR_08142018_10m_0_1um_scaffold_1336_2
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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359..1477
DNA (1119bp) protein (373aa)
mnmA; thiouridylase (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7K0_9GAMM
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_1336_3
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1480..2148
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036FCEA8
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein
OR_08142018_10m_0_1um_scaffold_1336_4
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2198..3421)
DNA (1224bp) protein (408aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HL8_THICR
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ABB41355.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1336_5
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3514..4632)
DNA (1119bp) protein (373aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
response regulator receiver (CheY-like) modulated CheB methylesterase (EC:3.1.1.61)
chemotaxis protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036043B9
OR_08142018_10m_0_1um_scaffold_1336_6
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4649..5479)
DNA (831bp) protein (277aa)
chemotaxis protein CheR (EC:2.1.1.80)
chemotaxis protein CheR n=1 Tax=Thiomicrospira halophila RepID=UPI00036CE611
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_1336_7
unknown

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5570..6151
DNA (582bp) protein (194aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1336_8
unknown

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6253..6459
DNA (207bp) protein (69aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1336_9
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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6467..6754
DNA (288bp) protein (96aa)
ATP-dependent RNA helicase rhlE n=2 Tax=sulfur-oxidizing symbionts RepID=G2DA11_9GAMM
FlhB domain protein {ECO:0000313|EMBL:EGV52506.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
type III secretion protein
OR_08142018_10m_0_1um_scaffold_1336_10
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6758..7189)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037C760A
purine-binding chemotaxis protein CheW
Chemotaxis protein CheW {ECO:0000313|EMBL:AHK15344.1}; TaxID=1208320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans R6-15.;"
OR_08142018_10m_0_1um_scaffold_1336_11
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7253..9232)
DNA (1980bp) protein (660aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
CheA signal transduction histidine kinase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HM7_THICR
CheA signal transduction histidine kinase
OR_08142018_10m_0_1um_scaffold_1336_12
unknown

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comp(9339..9794)
DNA (456bp) protein (152aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1336_13
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9855..10247)
DNA (393bp) protein (131aa)
Chemotaxis response regulator CheY n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HM9_THICR
response regulator receiver domain-containing protein
Chemotaxis response regulator CheY {ECO:0000313|EMBL:ABB41344.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1336_14
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..11190)
DNA (741bp) protein (247aa)
RNA polymerase sigma factor FliA n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HN0_THICR
sigma 28 (flagella/sporulation)
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1336_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11194..11913)
DNA (720bp) protein (240aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Thiomicrospira halophila RepID=UPI0003708518
cobyrinic acid a,c-diamide synthase
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
OR_08142018_10m_0_1um_scaffold_1336_16
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11931..12917)
DNA (987bp) protein (329aa)
flagellar biosynthesis regulator FlhF n=1 Tax=Thiomicrospira halophila RepID=UPI000361B666
flhF; flagellar biosynthesis regulator FlhF
Flagellar biosynthesis component FlhF {ECO:0000313|EMBL:ABB41341.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1336_17
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12928..14688)
DNA (1761bp) protein (587aa)
Flagellar biosynthesis protein FlhA n=2 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DD45_9GAMM
flhA; flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AHF01565.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Displaying 17 items

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