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OR_08142018_10m_0_1um_scaffold_1351

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_1351_1
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(146..1033)
DNA (888bp) protein (296aa)
Anthranilate synthase component I {ECO:0000313|EMBL:KDN95800.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KDN95800.1};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
anthranilate synthase subunit I (EC:4.1.3.27)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037378F6
OR_08142018_10m_0_1um_scaffold_1351_2
unknown

Not on your lists

comp(1101..1196)
DNA (96bp) protein (32aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1351_3
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1209..1889)
DNA (681bp) protein (227aa)
phosphoglycolate phosphatase (EC:3.1.3.18)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
phosphoglycolate phosphatase n=1 Tax=Thiomicrospira arctica RepID=UPI000370837A
OR_08142018_10m_0_1um_scaffold_1351_4
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2041..2742)
DNA (702bp) protein (234aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Ribulose-phosphate 3-epimerase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D908_9GAMM
ribulose-phosphate 3-epimerase
OR_08142018_10m_0_1um_scaffold_1351_5
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3026..3529
DNA (504bp) protein (168aa)
Phosphate-starvation-inducible E protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31J14_THICR
phosphate-starvation-inducible E
Phosphate-starvation-inducible E protein {ECO:0000313|EMBL:ABB40859.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1351_6
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3529..4407
DNA (879bp) protein (293aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Thiomicrospira halophila RepID=UPI00036B17C0
OR_08142018_10m_0_1um_scaffold_1351_7
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4412..5041
DNA (630bp) protein (210aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D911_9GAMM
dethiobiotin synthase
OR_08142018_10m_0_1um_scaffold_1351_8
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5038..7128)
DNA (2091bp) protein (697aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCJ3_9GAMM
glutamate-ammonia-ligase adenylyltransferase
OR_08142018_10m_0_1um_scaffold_1351_9
unknown

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comp(7125..7409)
DNA (285bp) protein (95aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1351_10
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7527..8408
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Aeromonas veronii AER39 RepID=K1I7E9_9GAMM
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ82900.1}; TaxID=1588629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. L_1B5_3.;"
geranyl transferase
OR_08142018_10m_0_1um_scaffold_1351_11
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8447..8824
DNA (378bp) protein (126aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7C1_9GAMM
6-pyruvoyl tetrahydrobiopterin synthase
OR_08142018_10m_0_1um_scaffold_1351_12
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8817..9635
DNA (819bp) protein (273aa)
prepilin peptidase (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31FT7_THICR
OR_08142018_10m_0_1um_scaffold_1351_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9652..9993)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7C3_9GAMM
PhnO
PhnO {ECO:0000313|EMBL:AHF01023.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_1351_14
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10098..11084)
DNA (987bp) protein (329aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Thiamine-monophosphate kinase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RU36_ALLVD
OR_08142018_10m_0_1um_scaffold_1351_15
Marinomonas ushuaiensis, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11090..11572)
DNA (483bp) protein (161aa)
N utilization substance protein B homolog n=1 Tax=Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181) RepID=F6CXM3_MARPP
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
NusB antitermination factor
OR_08142018_10m_0_1um_scaffold_1351_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11569..12042)
DNA (474bp) protein (158aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thiomicrospira arctica RepID=UPI0003683795
ribH; 6,7-dimethyl-8-ribityllumazine synthase
OR_08142018_10m_0_1um_scaffold_1351_17
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12057..13166)
DNA (1110bp) protein (370aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Thiomicrospira arctica RepID=UPI00037CB660
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_1351_18
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13153..13767)
DNA (615bp) protein (205aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D8F5_THICA
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ABB41994.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1351_19
GWF2_Sideroxydans_59_14_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13792..14889)
DNA (1098bp) protein (366aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CNH9_SIDLE
Tax=GWF2_Sideroxydans_59_14_curated
OR_08142018_10m_0_1um_scaffold_1351_20
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14969..15436)
DNA (468bp) protein (156aa)
Transcriptional repressor NrdR n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NRDR_THICR
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_1351_21
Pseudomonas rhizosphaerae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15580..16842)
DNA (1263bp) protein (421aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:AIS18516.1}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:AIS18516.1};; TaxID=216142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas rhizosphaerae.;"
Serine hydroxymethyltransferase n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AV53_PSERE
OR_08142018_10m_0_1um_scaffold_1351_22
RIFOXYD2_FULL_Sulfurimonas_37_8_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(17096..17500)
DNA (405bp) protein (135aa)
pilus biogenesis protein n=1 Tax=Aquaspirillum serpens RepID=UPI0003B5901A
PilT domain-containing protein
Tax=RIFOXYD2_FULL_Sulfurimonas_37_8_curated
OR_08142018_10m_0_1um_scaffold_1351_23
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17490..17702)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Aquaspirillum serpens RepID=UPI0003B6C688
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG31664.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_1351_24
unknown

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comp(17714..17872)
DNA (159bp) protein (53aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1351_25
unknown

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comp(17876..18073)
DNA (198bp) protein (66aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_1351_26
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18187..19413)
DNA (1227bp) protein (409aa)
Porin Gram-negative type n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVH6_HALNC
porin
Porin Gram-negative type {ECO:0000313|EMBL:ACX96806.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Displaying 26 items

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