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OR_08142018_10m_0_1um_scaffold_160

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_160_1
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1930
DNA (1929bp) protein (643aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Methylomicrobium album BG8 RepID=H8GQ79_METAL
phenylalanyl-tRNA synthetase subunit beta
OR_08142018_10m_0_1um_scaffold_160_2
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1943..2236
DNA (294bp) protein (98aa)
DNA-binding protein n=1 Tax=Thiomicrospira arctica RepID=UPI000377BB56
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
integration host factor subunit alpha
OR_08142018_10m_0_1um_scaffold_160_3
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2240..2644
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000371185F
MerR family transcriptional regulator {ECO:0000313|EMBL:KDN96770.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
MerR family transcriptional regulator
OR_08142018_10m_0_1um_scaffold_160_trna_1
unknown

Not on your lists

2682..2755
DNA (74bp)
transferRNA Pro
OR_08142018_10m_0_1um_scaffold_160_4
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2812..3612)
DNA (801bp) protein (267aa)
inositol monophosphatase n=1 Tax=Thiomicrospira halophila RepID=UPI0003712983
inositol monophosphatase
Inositol monophosphatase family protein {ECO:0000313|EMBL:ABB41210.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_160_5
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3733..4518
DNA (786bp) protein (262aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I12_THICR
RNA methyl transferase TrmH
OR_08142018_10m_0_1um_scaffold_160_6
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4515..5324
DNA (810bp) protein (270aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:ADE15036.1}; EC=2.3.1.30 {ECO:0000313|EMBL:ADE15036.1};; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Serine acetyltransferase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3R4_NITHN
OR_08142018_10m_0_1um_scaffold_160_7
Plesiomonas shigelloides, Plesiomonas, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5408..5866
DNA (459bp) protein (153aa)
Iron-sulfur cluster assembly transcription factor IscR, putative n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8ATL9_PLESH
Iron-sulfur cluster assembly transcription factor IscR, putative {ECO:0000313|EMBL:EON89699.1}; TaxID=1315976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Plesiomonas.;" source="Plesiomonas shigelloides 302-73.;"
AsnC family transcriptional regulator
OR_08142018_10m_0_1um_scaffold_160_8
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5891..6217
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I09_THICR
HesB/YadR/YfhF
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:ABB41214.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_160_9
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6274..8175
DNA (1902bp) protein (634aa)
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WG28_BURSC
adenylate/guanylate cyclase with Chase sensor
Adenylate/guanylate cyclase with Chase sensor {ECO:0000313|EMBL:ADG19404.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
OR_08142018_10m_0_1um_scaffold_160_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8233..9954
DNA (1722bp) protein (574aa)
Type I secretion system ATPase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSA8_9GAMM
Type I secretion system ATPase {ECO:0000313|EMBL:EIJ34251.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
type I secretion system ATPase
OR_08142018_10m_0_1um_scaffold_160_11
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9951..11387
DNA (1437bp) protein (479aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSA7_9GAMM
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:EIJ34250.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
Type I secretion membrane fusion protein, HlyD
OR_08142018_10m_0_1um_scaffold_160_12
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11384..12685
DNA (1302bp) protein (434aa)
TolC family type I secretion outer membrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B8S1_9PROT
TolC family type I secretion outer membrane protein
TolC family type I secretion outer membrane protein {ECO:0000313|EMBL:BAN36717.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
OR_08142018_10m_0_1um_scaffold_160_13
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12714..13403
DNA (690bp) protein (230aa)
Putative cyclic nucleotide-binding regulatory protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RC77_CUPTR
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EYS85161.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
cyclic nucleotide-binding regulatory protein
OR_08142018_10m_0_1um_scaffold_160_14
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13457..14107)
DNA (651bp) protein (217aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ADC72946.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ADC72946.1};; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Thioalkalivibrio sp. (strain K90mix) RepID=D3SEP1_THISK
OR_08142018_10m_0_1um_scaffold_160_15
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14246..14839)
DNA (594bp) protein (198aa)
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Superoxide dismutase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLI6_THISH
OR_08142018_10m_0_1um_scaffold_160_16
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14897..15220)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Spongiibacter tropicus RepID=UPI0003B5D046
hypothetical protein
YcgL domain-containing protein EI16_05865 {ECO:0000256|HAMAP-Rule:MF_01866}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
OR_08142018_10m_0_1um_scaffold_160_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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15351..16298
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Spiribacter sp. UAH-SP71 RepID=U5T165_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
OR_08142018_10m_0_1um_scaffold_160_18
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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16295..17521
DNA (1227bp) protein (409aa)
Multifunctional CCA protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D924_9GAMM
tRNA nucleotidyl transferase
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_160_19
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17634..18236
DNA (603bp) protein (201aa)
OmpA/MotB domain protein n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E2Z0_9GAMM
OmpA/MotB domain protein {ECO:0000313|EMBL:EGZ49196.1}; Flags: Precursor;; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
ompA2; outer membrane protein OmpA
OR_08142018_10m_0_1um_scaffold_160_20
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18407..20437
DNA (2031bp) protein (677aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D933_THICA
OR_08142018_10m_0_1um_scaffold_160_21
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20524..21522
DNA (999bp) protein (333aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D920_9GAMM
glyceraldehyde-3-phosphate dehydrogenase
OR_08142018_10m_0_1um_scaffold_160_22
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21611..22792
DNA (1182bp) protein (394aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB9_9PROT
OR_08142018_10m_0_1um_scaffold_160_23
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22920..24374
DNA (1455bp) protein (485aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
pyruvate kinase (EC:2.7.1.40)
pyruvate kinase n=1 Tax=Thiomicrospira halophila RepID=UPI00037AF8A2
OR_08142018_10m_0_1um_scaffold_160_24
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24428..25492
DNA (1065bp) protein (355aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:AHF00440.1}; EC=4.1.2.13 {ECO:0000313|EMBL:AHF00440.1};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D917_9GAMM
OR_08142018_10m_0_1um_scaffold_160_25
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25640..26062
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
Nucleoside diphosphate kinase n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=NDK_SACD2
nucleoside diphosphate kinase
OR_08142018_10m_0_1um_scaffold_160_26
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26062..27228
DNA (1167bp) protein (389aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
50S rRNA methyltransferase n=1 Tax=Thiomicrospira arctica RepID=UPI00037959F7
yfgB; putative Fe-S containing enzyme
OR_08142018_10m_0_1um_scaffold_160_27
Mannheimia varigena, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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27225..27695
DNA (471bp) protein (157aa)
DNA-binding helix-turn-helix protein n=1 Tax=Haemophilus paraphrohaemolyticus HK411 PF3_9PAST">RepID=I2NPF3_9PAST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG76199.1}; TaxID=1433287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia varigena USDA-ARS-USMARC-1296.;"
OR_08142018_10m_0_1um_scaffold_160_28

Not on your lists


27705..28973
DNA (1269bp) protein (423aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Methylophaga lonarensis MPL RepID=M7NUE2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKN51865.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
OR_08142018_10m_0_1um_scaffold_160_29
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29008..29652
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BMA6_9BACT
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
Displaying items 1-30 of 40 in total

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