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OR_08142018_10m_0_1um_scaffold_289

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_289_1
Halomonas salina, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..939
DNA (939bp) protein (313aa)
magnesium transporter n=1 Tax=Halomonas smyrnensis RepID=UPI0002DB3C7F
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=42565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas salina.;"
Mg2+ transporter MgtE
OR_08142018_10m_0_1um_scaffold_289_2
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(1039..1257)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D7B3_9GAMM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:KIJ71719.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
OR_08142018_10m_0_1um_scaffold_289_3
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1434..1910
DNA (477bp) protein (159aa)
Putative outer membrane lipoprotein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUW4_BORA1
PAL cross-reacting lipoprotein {ECO:0000313|EMBL:EXJ10768.1}; TaxID=1229521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. AK23.;"
slyB; outer membrane lipoprotein
OR_08142018_10m_0_1um_scaffold_289_4
unknown

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1937..2257
DNA (321bp) protein (107aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_289_5
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2320..2682)
DNA (363bp) protein (121aa)
Fis family transcriptional regulator n=1 Tax=Thiomicrospira arctica RepID=UPI000380BE8E
Fis family transcriptional regulator
Fis family transcriptional regulator {ECO:0000313|EMBL:AHF01191.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_289_6
unknown

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comp(2675..2896)
DNA (222bp) protein (74aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_289_7
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2904..3338)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035DCA68
Positive regulator of CheA protein activity {ECO:0000313|EMBL:EPJ48225.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
CheW-like protein
OR_08142018_10m_0_1um_scaffold_289_8
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3349..5412)
DNA (2064bp) protein (688aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
CheA signal transduction histidine kinase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31F69_THICR
CheA signal transduction histidine kinase
OR_08142018_10m_0_1um_scaffold_289_9
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5691..6383)
DNA (693bp) protein (231aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Methyloversatilis universalis RepID=UPI000363CA5A
ABC transporter-like protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
OR_08142018_10m_0_1um_scaffold_289_10
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6387..7604)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VIC9_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM35407.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
OR_08142018_10m_0_1um_scaffold_289_11
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7617..8819)
DNA (1203bp) protein (401aa)
RND transporter n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00035D9BC2
Uncharacterized protein {ECO:0000313|EMBL:CDS52717.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
RND family efflux transporter MFP subunit
OR_08142018_10m_0_1um_scaffold_289_12
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8835..9605)
DNA (771bp) protein (257aa)
Outer membrane protein assembly factor BamD n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB59_9GAMM
competence protein ComL
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_289_13
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9682..10647
DNA (966bp) protein (322aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Pseudouridine synthase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L167_FRAAD
RluA family pseudouridine synthase
OR_08142018_10m_0_1um_scaffold_289_14
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10824..11567
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BYS2_9BACT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
yfiH; conserved hypothetical protein
OR_08142018_10m_0_1um_scaffold_289_15
uncultured SUP05 cluster bacterium, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11589..13583)
DNA (1995bp) protein (665aa)
Kef-type K+ transport system n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD40_9GAMM
Kef-type K+ transport system {ECO:0000313|EMBL:EEZ79966.1}; TaxID=655186 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; SUP05 cluster; environmental samples.;" source="uncultured SUP05 cluster bacterium.;"
potassium efflux system protein
OR_08142018_10m_0_1um_scaffold_289_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13576..14463)
DNA (888bp) protein (296aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:AHF01329.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AHF01329.1};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB56_9GAMM
OR_08142018_10m_0_1um_scaffold_289_17
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14646..15203
DNA (558bp) protein (186aa)
N-acetyl-anhydromuranmyl-L-alanine amidase {ECO:0000313|EMBL:CDI02009.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CDI02009.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
AmpD protein n=1 Tax=Pseudoalteromonas sp. BSi20439 RepID=G7FFH2_9GAMM
N-acetyl-anhydromuranmyl-L-alanine amidase
OR_08142018_10m_0_1um_scaffold_289_18
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15455..16654
DNA (1200bp) protein (400aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Tryptophan synthase beta chain n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8G4_9GAMM
tryptophan synthase subunit alpha
OR_08142018_10m_0_1um_scaffold_289_19
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16651..17457
DNA (807bp) protein (269aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
tryptophan synthase, subunit alpha (EC:4.2.1.20)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI0000E19906
OR_08142018_10m_0_1um_scaffold_289_20
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17490..18371
DNA (882bp) protein (294aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
acetyl-CoA carboxylase subunit beta n=1 Tax=Thiomicrospira arctica RepID=UPI000369DA34
Uncharacterized protein {ECO:0000313|EMBL:AKH19988.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
OR_08142018_10m_0_1um_scaffold_289_21
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18371..19669
DNA (1299bp) protein (433aa)
FolC bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HH1_THICR
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
FolC bifunctional folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:ABB41402.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_289_22
unknown

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19666..20307
DNA (642bp) protein (214aa)
dedD; membrane protein
OR_08142018_10m_0_1um_scaffold_289_23
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20723..21751
DNA (1029bp) protein (343aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Amidophosphoribosyltransferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8F9_9GAMM
Displaying 23 items

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