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OR_08142018_10m_0_1um_scaffold_349

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_349_1
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..893)
DNA (891bp) protein (297aa)
FeS assembly protein SufD n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8Q0_9GAMM
FeS assembly protein SufD
FeS assembly protein SufD {ECO:0000313|EMBL:AHF00554.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_349_2
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(871..1617)
DNA (747bp) protein (249aa)
Iron-regulated ABC transporter ATPase subunit SufC n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31I47_THICR
Cysteine desulfurase {ECO:0000313|EMBL:KDN96863.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
FeS assembly ATPase SufC
OR_08142018_10m_0_1um_scaffold_349_3
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1765..3246)
DNA (1482bp) protein (494aa)
FeS assembly protein SufB n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9L4_THICA
FeS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:AEG30971.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_349_4
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3330..4265)
DNA (936bp) protein (312aa)
ABC transporter substrate binding protein (Zinc) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JWD5_AGRVS
znuA; High-affinity zinc uptake system protein znuA
High-affinity zinc uptake system protein znuA {ECO:0000313|EMBL:CCQ74553.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
OR_08142018_10m_0_1um_scaffold_349_5
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4300..5034
DNA (735bp) protein (245aa)
ABC transporter related protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8Q5_9GAMM
ABC transporter
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_349_6
Haemophilus pittmaniae, Haemophilus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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5027..5809
DNA (783bp) protein (261aa)
High-affinity zinc transporter membrane component n=1 Tax=Haemophilus pittmaniae HK 85 RepID=F9QBB0_9PAST
High-affinity zinc transporter membrane component {ECO:0000313|EMBL:EGV05186.1}; TaxID=1035188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus.;" source="Haemophilus pittmaniae HK 85.;"
znuB; high-affinity zinc uptake system membrane protein ZnuB
OR_08142018_10m_0_1um_scaffold_349_7
Paraglaciecola agarilytica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5966..6802)
DNA (837bp) protein (279aa)
Peptidase M23B n=2 Tax=Glaciecola RepID=K6WW54_9ALTE
Peptidase M23B {ECO:0000313|EMBL:GAC03661.1}; TaxID=1125747 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola agarilytica NO2.;"
peptidase M23
OR_08142018_10m_0_1um_scaffold_349_trna_3
unknown

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comp(6887..6960)
DNA (74bp)
transferRNA Asp
OR_08142018_10m_0_1um_scaffold_349_trna_2
unknown

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comp(6968..7040)
DNA (73bp)
transferRNA Val
OR_08142018_10m_0_1um_scaffold_349_8
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(7189..7464)
DNA (276bp) protein (92aa)
transcriptional regulator n=1 Tax=Thiomicrospira arctica RepID=UPI0003801717
DNA-binding protein HU {ECO:0000313|EMBL:EGO64564.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
transcriptional regulator HU subunit alpha
OR_08142018_10m_0_1um_scaffold_349_9
Alteromonas macleodii, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7566..9974)
DNA (2409bp) protein (803aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1004787 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas macleodii (strain Balearic Sea AD45).;"
Lon protease n=1 Tax=Alteromonas macleodii (strain Balearic Sea AD45) RepID=K0EL16_ALTMB
ATP-dependent protease La
OR_08142018_10m_0_1um_scaffold_349_10

Not on your lists

comp(10002..11270)
DNA (1269bp) protein (423aa)
ATP-dependent protease n=1 Tax=Psychromonas ossibalaenae RepID=UPI00037AD202
Uncharacterized protein {ECO:0000313|EMBL:KKO04062.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
OR_08142018_10m_0_1um_scaffold_349_11
Moraxella bovoculi, Moraxella, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11289..11915)
DNA (627bp) protein (209aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=743974 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Moraxella.;" source="Moraxella bovoculi 237.;"
clpP; ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Algicola sagamiensis RepID=UPI000361D8C9
OR_08142018_10m_0_1um_scaffold_349_12
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11919..13211)
DNA (1293bp) protein (431aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
Trigger factor n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DB95_9GAMM
trigger factor
OR_08142018_10m_0_1um_scaffold_349_trna_1
unknown

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comp(13417..13498)
DNA (82bp)
transferRNA Leu
OR_08142018_10m_0_1um_scaffold_349_13
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13570..14289)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T4P2_9GAMM
Protein disulfide isomerase II DsbC {ECO:0000313|EMBL:KFZ91139.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
thiol:disulfide interchange protein DsbC
OR_08142018_10m_0_1um_scaffold_349_14
Acinetobacter brisouii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14366..14713)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Acinetobacter brisouii RepID=N9ARJ3_9GAMM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1341683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter brisouii CIP 110357.;"
50S ribosomal protein L19
OR_08142018_10m_0_1um_scaffold_349_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14798..15553)
DNA (756bp) protein (252aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000360BA47
trmD; tRNA (guanine-N1)-methyltransferase
OR_08142018_10m_0_1um_scaffold_349_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15546..16082)
DNA (537bp) protein (179aa)
Ribosome maturation factor RimM n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DBP2_9GAMM
ribosome maturation factor RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_349_17
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16089..16334)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T225_META2
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
OR_08142018_10m_0_1um_scaffold_349_18
Gallibacterium anatis, Gallibacterium, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16632..17372)
DNA (741bp) protein (247aa)
Signal recognition particle protein n=1 Tax=Gallibacterium anatis (strain UMN179) RepID=F4HCW2_GALAU
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1396510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Gallibacterium.;" source="Gallibacterium anatis 4895.;"
signal recognition particle protein
Displaying 21 items

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