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OR_08142018_10m_0_1um_scaffold_373

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_373_1
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..755)
DNA (753bp) protein (251aa)
High affinity choline transporter n=1 Tax=Cellvibrio japonicus (strain Ueda107) PF73_CELJU">RepID=B3PF73_CELJU
high affinity choline transporter
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
OR_08142018_10m_0_1um_scaffold_373_2
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(756..2012)
DNA (1257bp) protein (419aa)
MFS transporter n=1 Tax=Pseudomonas caeni RepID=UPI0003B349BE
major facilitator superfamily transport protein
Major facilitator superfamily transport protein {ECO:0000313|EMBL:AEG30966.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_373_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2134..2679
DNA (546bp) protein (182aa)
Lipoprotein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9K3_THICA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF00541.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_373_4
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2680..3177
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9K2_THICA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG30959.1}; Flags: Precursor;; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
OR_08142018_10m_0_1um_scaffold_373_5
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3182..3562)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCJ7_9GAMM
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AHF01858.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_373_6
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3724..4659
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Moritella dasanensis RepID=UPI0003179DC6
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=BJP_S1_SUB10_Methylophilales_55_32
OR_08142018_10m_0_1um_scaffold_373_7
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4728..6908)
DNA (2181bp) protein (727aa)
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D966_9GAMM
bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
Bifunctional (P)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase {ECO:0000313|EMBL:AHF00391.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_373_8
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6917..7141)
DNA (225bp) protein (75aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D965_9GAMM
DNA-directed RNA polymerase subunit omega
OR_08142018_10m_0_1um_scaffold_373_9
unknown

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7415..7723
DNA (309bp) protein (103aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_373_10
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7686..9845
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037DCBD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF02376.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_373_11
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9909..10367)
DNA (459bp) protein (153aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=207949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Bermanella.;" source="Bermanella marisrubri.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Bermanella marisrubri RepID=Q1N440_9GAMM
OR_08142018_10m_0_1um_scaffold_373_12
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10425..10976
DNA (552bp) protein (184aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
Shikimate kinase n=1 Tax=Pseudomonas sp. Lz4W RepID=M5R3C0_9PSED
aroK; shikimate kinase
OR_08142018_10m_0_1um_scaffold_373_13
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10976..12661
DNA (1686bp) protein (562aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000255|HAMAP-Rule:MF_00110}; EC=4.2.3.4 {ECO:0000255|HAMAP-Rule:MF_00110};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
3-dehydroquinate synthase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=AROB_THICR
OR_08142018_10m_0_1um_scaffold_373_14
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12848..14773
DNA (1926bp) protein (642aa)
Putative Methyl-accepting chemotaxis sensory transducer n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F672_9PROT
putative Methyl-accepting chemotaxis sensory transducer
Putative Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CDL00944.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
OR_08142018_10m_0_1um_scaffold_373_15
Halomonas boliviensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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14770..15804
DNA (1035bp) protein (345aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1072583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas boliviensis LC1.;"
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Halomonas boliviensis LC1 RepID=G9E8P9_9GAMM
OR_08142018_10m_0_1um_scaffold_373_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15813..17267
DNA (1455bp) protein (485aa)
putative Protein methyltransferase frzF (EC:2.1.1.80)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6E5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDL00942.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
OR_08142018_10m_0_1um_scaffold_373_17
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17257..19452
DNA (2196bp) protein (732aa)
Gliding motility regulatory protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2W7_MAGSA
gliding motility regulatory protein
Gliding motility regulatory protein {ECO:0000313|EMBL:BAE51808.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
OR_08142018_10m_0_1um_scaffold_373_18
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19480..19851
DNA (372bp) protein (124aa)
response regulator n=1 Tax=Pseudomonas caeni RepID=UPI0003B55B0C
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY {ECO:0000313|EMBL:KDE40071.1}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
response regulator receiver protein
OR_08142018_10m_0_1um_scaffold_373_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19851..21554
DNA (1704bp) protein (568aa)
putative Response regulator PleD [Includes: Diguanylate cyclase] (EC:2.7.7.65)
Putative Response regulator PleD {ECO:0000313|EMBL:CDL00939.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CDL00939.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Putative Response regulator PleD n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F668_9PROT
OR_08142018_10m_0_1um_scaffold_373_20
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21563..22078
DNA (516bp) protein (172aa)
chemotaxis protein n=1 Tax=Pseudomonas caeni RepID=UPI0003B3B153
Uncharacterized protein {ECO:0000313|EMBL:KGK42412.1}; TaxID=1545442 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
putative chemotaxis protein CheW
OR_08142018_10m_0_1um_scaffold_373_21
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22513..23835
DNA (1323bp) protein (441aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B510_9PROT
rimO; hypothetical protein
Tax=BJP_IG2103_Rhodocyclales_63_50
OR_08142018_10m_0_1um_scaffold_373_22
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23908..24666)
DNA (759bp) protein (253aa)
imidazole glycerol phosphate synthase subunit HisF (EC:5.3.1.16)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Beggiatoa alba B18LD RepID=I3CEL2_9GAMM
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
OR_08142018_10m_0_1um_scaffold_373_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24666..25409)
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000255|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=HIS4_THICR
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
OR_08142018_10m_0_1um_scaffold_373_24
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25446..26096)
DNA (651bp) protein (217aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000255|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000255|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278}; Short=IGPS subunit HisH {ECO:0000255|HAMAP-Rule:MF_00278};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=HIS5_THICR
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
OR_08142018_10m_0_1um_scaffold_373_25
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26097..26684)
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
imidazoleglycerol-phosphate dehydratase n=1 Tax=Thiomicrospira arctica RepID=UPI000370C074
OR_08142018_10m_0_1um_scaffold_373_26
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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27094..27840
DNA (747bp) protein (249aa)
cytochrome oxidase subunit I n=1 Tax=Thiomicrospira arctica RepID=UPI00036145B0
cbb3-type cytochrome c oxidase subunit I
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_373_27
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27843..28424
DNA (582bp) protein (194aa)
Cbb3-type cytochrome oxidase CcoN subunit n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31E68_THICR
cbb3-type cytochrome c oxidase subunit I
Cbb3-type cytochrome oxidase CcoN subunit {ECO:0000313|EMBL:ABB42555.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_373_28
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28488..29267
DNA (780bp) protein (260aa)
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAK5_9GAMM
cytochrome oxidase subunit II
Cytochrome oxidase subunit II {ECO:0000313|EMBL:AHF02007.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_373_29
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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29260..29445
DNA (186bp) protein (62aa)
Cbb3-type cytochrome oxidase component FixQ n=1 Tax=Methylophaga lonarensis MPL RepID=M7P244_9GAMM
Cbb3-type cytochrome oxidase component FixQ {ECO:0000313|EMBL:EMR13552.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lonarensis MPL.;"
Cbb3-type cytochrome oxidase component FixQ
OR_08142018_10m_0_1um_scaffold_373_30
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29469..30344
DNA (876bp) protein (292aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31E70_THICR
cytochrome c oxidase, cbb3-type subunit III
Tax=CG_Thiomicrospira_01
Displaying items 1-30 of 32 in total

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