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OR_08142018_10m_0_1um_scaffold_383

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_383_1
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..243
DNA (243bp) protein (81aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC96_THICA
OR_08142018_10m_0_1um_scaffold_383_2
uncultured SUP05 cluster bacterium, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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302..1261
DNA (960bp) protein (320aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=655186 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; SUP05 cluster; environmental samples.;" source="uncultured SUP05 cluster bacterium.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE84_9GAMM
OR_08142018_10m_0_1um_scaffold_383_3
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1321..1698
DNA (378bp) protein (126aa)
Cell division protein FtsB n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31G69_THICR
septum formation initiator
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
OR_08142018_10m_0_1um_scaffold_383_4
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1861..4449
DNA (2589bp) protein (863aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
Leucine--tRNA ligase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=SYL_THICR
leucyl-tRNA synthetase
OR_08142018_10m_0_1um_scaffold_383_5
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4473..5018
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IE7_THICR
hypothetical protein
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_383_6
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5015..6043
DNA (1029bp) protein (343aa)
DNA polymerase III delta subunit {ECO:0000313|EMBL:KEA64423.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KEA64423.1};; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
DNA polymerase III, delta subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CEJ0_9GAMM
DNA polymerase III subunit delta
OR_08142018_10m_0_1um_scaffold_383_7
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6242..7495
DNA (1254bp) protein (418aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans.;"
Gamma-glutamyl phosphate reductase n=1 Tax=Cellvibrio sp. BR RepID=I3I6U7_9GAMM
gamma-glutamyl phosphate reductase
OR_08142018_10m_0_1um_scaffold_383_8
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7526..8527
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Shewanella baltica (strain OS185) RepID=A6WT09_SHEB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK46780.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain ANA-3).;"
OR_08142018_10m_0_1um_scaffold_383_9
unknown

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8620..8877
DNA (258bp) protein (86aa)

This feature has no annotations

OR_08142018_10m_0_1um_scaffold_383_10
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8894..10507)
DNA (1614bp) protein (538aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella agri BL06.;"
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Alishewanella agri BL06 RepID=I8UBJ1_9ALTE
OR_08142018_10m_0_1um_scaffold_383_11
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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10592..11050
DNA (459bp) protein (153aa)
AlgM gene product n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPD8_9GAMM
protein AlgM
AlgM gene product {ECO:0000313|EMBL:CCU71353.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-1.;"
OR_08142018_10m_0_1um_scaffold_383_12
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11065..12498
DNA (1434bp) protein (478aa)
Protease Do {ECO:0000313|EMBL:EGZ45057.1}; EC=3.4.21.108 {ECO:0000313|EMBL:EGZ45057.1};; Flags: Precursor;; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037E75EB
protease Do
OR_08142018_10m_0_1um_scaffold_383_13
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12726..14534
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Elongation factor 4 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DCS3_THICA
GTP-binding protein LepA
OR_08142018_10m_0_1um_scaffold_383_14
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14550..15308
DNA (759bp) protein (253aa)
peptidase S26A, signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
signal peptidase I n=1 Tax=Thiomicrospira halophila RepID=UPI00035D00BA
OR_08142018_10m_0_1um_scaffold_383_15
Halomonas hydrothermalis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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15308..15991
DNA (684bp) protein (228aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=115561 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas hydrothermalis.;"
rnc; ribonuclease III (EC:3.1.26.3)
ribonuclease III n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A49C
OR_08142018_10m_0_1um_scaffold_383_16
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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15996..16286
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036C5661
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
GTP-binding protein Era-like-protein
Displaying 16 items

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