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OR_08142018_10m_0_1um_scaffold_595

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08142018_10m_0_1um_scaffold_595_1
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..901)
DNA (900bp) protein (300aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
Cysteine--tRNA ligase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC70_THICA
OR_08142018_10m_0_1um_scaffold_595_2
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(906..1694)
DNA (789bp) protein (263aa)
Glutamate--tRNA ligase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYC6_NITHN
glutamyl-tRNA synthetase
Tax=RBG_16_Gammaproteobacteria_57_12_curated
OR_08142018_10m_0_1um_scaffold_595_3
Coxiella burnetii, Coxiella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1694..2056)
DNA (363bp) protein (121aa)
gltX1; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase 1 {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS 1 {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=434922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella.;" source="Coxiella burnetii (strain Dugway 5J108-111).;"
Glutamate--tRNA ligase 1 n=1 Tax=Coxiella burnetii (strain Dugway 5J108-111) RepID=SYE1_COXBN
OR_08142018_10m_0_1um_scaffold_595_4
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2136..2447)
DNA (312bp) protein (104aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
Serine--tRNA ligase n=4 Tax=root RepID=SYS_ACIF2
Seryl-tRNA synthetase
OR_08142018_10m_0_1um_scaffold_595_5
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2393..3352)
DNA (960bp) protein (320aa)
Serine--tRNA ligase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY72_9GAMM
seryl-tRNA synthetase
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
OR_08142018_10m_0_1um_scaffold_595_6
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3653..5527
DNA (1875bp) protein (625aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZN9_RHOFD
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ABD68764.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
OR_08142018_10m_0_1um_scaffold_595_7
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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5512..6942
DNA (1431bp) protein (477aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSG3_SIDLE
diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:ADE11899.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
OR_08142018_10m_0_1um_scaffold_595_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6939..7487
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036716E6
membrane metalloprotease
Membrane metalloprotease {ECO:0000313|EMBL:CDM23402.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
OR_08142018_10m_0_1um_scaffold_595_9
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7529..8314
DNA (786bp) protein (262aa)
D-lactate dehydrogenase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A2FC0
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:AIP26344.1}; D-lactate dehydrogenase {ECO:0000313|EMBL:ABC38493.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
OR_08142018_10m_0_1um_scaffold_595_10
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8321..12235)
DNA (3915bp) protein (1305aa)
ATP-dependent helicase HrpA n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCZ1_9GAMM
ATP-dependent helicase
ATP-dependent helicase {ECO:0000313|EMBL:AHF01514.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_595_11
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12326..13057
DNA (732bp) protein (244aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31H45_THICR
Beta-lactamase-like
Tax=CG_Thiomicrospira_01
OR_08142018_10m_0_1um_scaffold_595_12
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13134..13586)
DNA (453bp) protein (151aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XYE1_9BACT
peptidylprolyl isomerase, FKBP-type
OR_08142018_10m_0_1um_scaffold_595_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13647..14360
DNA (714bp) protein (238aa)
DNA polymerase III, epsilon subunit n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCZ6_9GAMM
DNA polymerase III subunit epsilon
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:AHF01519.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08142018_10m_0_1um_scaffold_595_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14368..14799)
DNA (432bp) protein (144aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML22_9SPHN
OR_08142018_10m_0_1um_scaffold_595_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14809..15522)
DNA (714bp) protein (238aa)
type 11 methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D1C4D
SAM-dependent methyltransferases {ECO:0000313|EMBL:GAD23988.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
methylase
OR_08142018_10m_0_1um_scaffold_595_16
R_Gammaproteobacteria_43_28, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15575..16399
DNA (825bp) protein (275aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=GLO2_ALKEH
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_43_28_curated
OR_08142018_10m_0_1um_scaffold_595_17
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16396..17616
DNA (1221bp) protein (407aa)
Lytic transglycosylase n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KUD1_SIMAS
Lytic transglycosylase {ECO:0000313|EMBL:KJE38999.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actiniarum.;"
lytic transglycosylase
Displaying 17 items

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