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RTP_02272018_0_2um_scaffold_125

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_125_trna_1
unknown

Not on your lists

comp(57..130)
-----------------
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_125_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

417..1604
-----------------
DNA (1188bp)
protein (396aa)
Iron-containing alcohol dehydrogenase id=1363289 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
iron-containing alcohol dehydrogenase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1673..2245
-----------------
DNA (573bp)
protein (191aa)
Putative uncharacterized protein id=1363288 bin=GWE1_T_denit_62_9 species=Methylophaga aminisulfidivorans genus=Methylophaga taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
LemA family
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_125_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2245..3147
-----------------
DNA (903bp)
protein (301aa)
Uncharacterized protein id=1363287 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3206..3481
-----------------
DNA (276bp)
protein (92aa)
Putative uncharacterized protein id=1363286 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3501..3926)
-----------------
DNA (426bp)
protein (142aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036726F4
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_125_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3927..5387)
-----------------
DNA (1461bp)
protein (487aa)
putative flavodoxin oxidoreductase id=12497830 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
flavodoxin oxidoreductase
Putative flavodoxin oxidoreductase {ECO:0000313|EMBL:AAZ97723.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_125_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5491..7194
-----------------
DNA (1704bp)
protein (568aa)
exonuclease RecJ (EC:3.1.-.-)
single-stranded DNA exonuclease n=1 Tax=Thiobacillus thioparus RepID=UPI0003649E06
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_125_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7401..8411)
-----------------
DNA (1011bp)
protein (337aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Thiobacillus thioparus RepID=UPI000369510D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_125_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8613..9584)
-----------------
DNA (972bp)
protein (324aa)
GDP-L-fucose synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F6B5E
GDP-L-fucose synthetase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9590..10675)
-----------------
DNA (1086bp)
protein (362aa)
GDP-mannose 4,6-dehydratase id=1295752 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GDP-mannose 4,6-dehydratase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11171..12091)
-----------------
DNA (921bp)
protein (307aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380D3A5
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12428..12655
-----------------
DNA (228bp)
protein (76aa)
Putative uncharacterized protein id=1331298 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12652..15456
-----------------
DNA (2805bp)
protein (935aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus thioparus RepID=UPI000370C726
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_125_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15680..16921
-----------------
DNA (1242bp)
protein (414aa)
Site-specific recombinase, phage integrase family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHX2_THIDA
phage integrase site specific recombinase
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:AAZ97761.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_125_15
unknown

Not on your lists

17731..18024
-----------------
DNA (294bp)
protein (98aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_16
unknown

Not on your lists

18241..18927
-----------------
DNA (687bp)
protein (229aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_17
unknown

Not on your lists

comp(19413..19556)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_18
unknown

Not on your lists

comp(19553..19765)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_19
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20319..20687
-----------------
DNA (369bp)
protein (123aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XVY0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGQ63873.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_125_20
unknown

Not on your lists

20736..20918
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_21
unknown

Not on your lists

comp(21030..21146)
-----------------
DNA (117bp)
protein (39aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_22
unknown

Not on your lists

comp(21217..21573)
-----------------
DNA (357bp)
protein (119aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_23
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21603..21827)
-----------------
DNA (225bp)
protein (75aa)
Uncharacterized protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EC15_GEOBB
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
RTP_02272018_0_2um_scaffold_125_24
unknown

Not on your lists

22488..22610
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_25
unknown

Not on your lists

22607..22810
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_125_26
Legionella longbeachae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22891..23229
-----------------
DNA (339bp)
protein (113aa)
SOS (Error prone) mutagenesis protein UmuD (EC:3.4.21.88)
Putative SOS (Error prone) mutagenesis protein UmuD {ECO:0000313|EMBL:CBJ12241.1}; EC=3.4.21.88 {ECO:0000313|EMBL:CBJ12241.1};; TaxID=661367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella longbeachae serogroup 1 (strain NSW150).;"
DNA repair protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003790B3B
RTP_02272018_0_2um_scaffold_125_27
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23171..23392)
-----------------
DNA (222bp)
protein (74aa)
Transcriptional regulator, LysR family n=2 Tax=Burkholderia pseudomallei RepID=C4KSF9_BURPE
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
RTP_02272018_0_2um_scaffold_125_28
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23752..24840)
-----------------
DNA (1089bp)
protein (363aa)
Molybdenum import ATP-binding protein ModC {ECO:0000256|HAMAP-Rule:MF_01705}; EC=3.6.3.29 {ECO:0000256|HAMAP-Rule:MF_01705};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
molybdate ABC transporter ATP-binding protein; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29] id=12495991 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
molybdate ABC transporter ATPase
RTP_02272018_0_2um_scaffold_125_29
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24837..25511)
-----------------
DNA (675bp)
protein (225aa)
molybdenum ABC transporter permease n=1 Tax=Pseudomonas stutzeri RepID=UPI0002D3C946
Molybdenum ABC transporter permease {ECO:0000313|EMBL:GAO35463.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
molybdenum ABC transporter permease
Displaying items 1-30 of 135 in total

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