ggKbase home page

RTP_02272018_0_2um_scaffold_180

Search features with annotation key words

Displaying items 61-89 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_180_60
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43597..44232)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379EA76
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:BAN36056.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_180_61
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44421..45194
DNA (774bp) protein (258aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037656E9
two component heavy metal response transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_180_62
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45191..46594
DNA (1404bp) protein (468aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FC468
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_180_63
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46852..47283)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WML7_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_180_64
Dickeya zeae, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47369..48460)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein n=1 Tax=Dickeya zeae (strain Ech1591) RepID=C6CR13_DICZE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT09030.1}; TaxID=561229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya zeae (strain Ech1591).;"
RTP_02272018_0_2um_scaffold_180_65
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48460..50331)
DNA (1872bp) protein (624aa)
ABC transporter n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DDS8_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA85663.1}; TaxID=644801 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri RCH2.;"
RTP_02272018_0_2um_scaffold_180_66
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50328..51965)
DNA (1638bp) protein (546aa)
Putative type I restriction-modification system specificity determinant n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPQ4_9CLOT
Putative type I restriction-modification system specificity determinant {ECO:0000313|EMBL:CCZ40599.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
restriction endonuclease S subunit
RTP_02272018_0_2um_scaffold_180_67
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51962..53662)
DNA (1701bp) protein (567aa)
DNA methyltransferase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B34C30
Type I restriction-modification system, DNA-methyltransferase subunit M
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_180_68
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53684..54547)
DNA (864bp) protein (288aa)
DNA-damage-inducible protein D n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AQE6_CHLCH
dinD; DNA-damage-inducible protein D
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_180_69
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54577..57375)
DNA (2799bp) protein (933aa)
hsdR; DEAD/DEAH box helicase (EC:3.1.21.3)
DEAD/DEAH box helicase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S59_NITEU
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_180_70
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57807..59336)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ED88C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_180_71
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59378..60697
DNA (1320bp) protein (440aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SJK4_GALCS
cytochrome c biogenesis protein transmembrane region
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_02272018_0_2um_scaffold_180_72
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60725..62152)
DNA (1428bp) protein (476aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D14C6
DEAD/DEAH box helicase
RTP_02272018_0_2um_scaffold_180_trna_2
unknown

Not on your lists

comp(62298..62369)
DNA (72bp)
transferRNA Val
RTP_02272018_0_2um_scaffold_180_73
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62615..64018
DNA (1404bp) protein (468aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
glutamyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003823A79
RTP_02272018_0_2um_scaffold_180_trna_1
unknown

Not on your lists

64049..64121
DNA (73bp)
transferRNA Thr
RTP_02272018_0_2um_scaffold_180_74
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64227..64595)
DNA (369bp) protein (123aa)
Putative Long-chain-fatty-acid--CoA ligase n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GDM3_DESGI
putative Long-chain-fatty-acid--CoA ligase
Putative Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AGW14216.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
RTP_02272018_0_2um_scaffold_180_75
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64653..65165)
DNA (513bp) protein (171aa)
Hydrogenase maturation protease n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU98_9GAMM
hydrogenase maturation protease
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_180_76
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65169..66467)
DNA (1299bp) protein (433aa)
Nickel-dependent hydrogenase large subunit n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JU97_9GAMM
nickel-dependent hydrogenase large subunit
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_180_77
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66464..67243)
DNA (780bp) protein (260aa)
Sulfhydrogenase delta subunit n=1 Tax=mine drainage metagenome RepID=E6QAH6_9ZZZZ
NADH ubiquinone oxidoreductase 20 kDa subunit
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_180_78
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67244..68077)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037D8ABD
hoxU; [NiFe] hydrogenase subunit gamma
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_180_79
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68070..69179)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QAH4_9ZZZZ
(NiFe) hydrogenase subunit beta
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_180_80
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(69324..69656)
DNA (333bp) protein (111aa)
Putative membrane-associated protein id=4524196 bin=GWC2_Nitrospirae-rel_56_14 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
RTP_02272018_0_2um_scaffold_180_81
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(69884..70177)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N862_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMR04763.1}; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_180_82
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70471..71136)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7P1H1_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RTP_02272018_0_2um_scaffold_180_83
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71224..72003)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QMI0_RALPI
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_180_84
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72000..73187)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BYP6_NITHN
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:EXI73767.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_180_85
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73232..74131)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C1493
universal stress protein
Universal stress protein {ECO:0000313|EMBL:AAZ97688.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_180_86
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74216..75217)
DNA (1002bp) protein (334aa)
arsenic transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037A6957
ACR3 family arsenite transporter
Putative arsenite transporter, ACR3 family {ECO:0000313|EMBL:AAZ97379.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 61-89 of 89 in total

View Taxonomy