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RTP_02272018_0_2um_scaffold_194

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Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_194_1
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

575..832
DNA (258bp) protein (86aa)
addiction module antitoxin n=1 Tax=Thioalkalivibrio sp. ALM2T RepID=UPI00036CF982
addiction module antitoxin
Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RTP_02272018_0_2um_scaffold_194_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

829..1119
DNA (291bp) protein (97aa)
type I site-specific deoxyribonuclease (EC:3.1.21.3)
Type I site-specific deoxyribonuclease n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYE6_HALNC
Putative Restriction endonuclease {ECO:0000313|EMBL:CDH43614.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
RTP_02272018_0_2um_scaffold_194_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1138..1722
DNA (585bp) protein (195aa)
Possible Transcriptional Regulator, TetR family id=1320208 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
slmA; nucleoid occlusion protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1710..2558)
DNA (849bp) protein (283aa)
molybdopterin biosynthesis protein MoeB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FCE1C
adenylyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2512..2907)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037CA894
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2987..4384)
DNA (1398bp) protein (466aa)
peptidase S41A, protease (EC:3.4.21.102)
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD57E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_194_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4386..5654)
DNA (1269bp) protein (423aa)
Peptidase family M23 protein id=1328410 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
M23 family peptidase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5661..7202)
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=1328411 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7370..7699
DNA (330bp) protein (110aa)
Putative Transcriptional Regulator, ArsR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGA2_THIDA
ArsR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_194_10
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7834..10944)
DNA (3111bp) protein (1037aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F2C6
cusA; RND family outer membrane copper/silver/drug transport protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_194_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10947..12266)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D89A1
heavy metal efflux system protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_12
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12275..12532)
DNA (258bp) protein (86aa)
copper-exporting ATPase (EC:3.6.3.4) id=12493237 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EIT67769.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
copper-translocating P-type ATPase
RTP_02272018_0_2um_scaffold_194_13
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12634..13572)
DNA (939bp) protein (313aa)
copper-containing nitrite reductase (EC:1.7.2.1)
Putative copper-containing nitrite reductase {ECO:0000313|EMBL:CAL63352.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CAL63352.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
nitrite reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D5783
RTP_02272018_0_2um_scaffold_194_14
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13588..13983)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003613C40
cytochrome c, class IC:cytochrome c, class I
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_02272018_0_2um_scaffold_194_15
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13980..14672)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372F17E
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_02272018_0_2um_scaffold_194_16
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14688..15743)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D90A9
pan1; multicopper oxidase type 1
Multicopper oxidase type 1 {ECO:0000313|EMBL:CAD84838.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
RTP_02272018_0_2um_scaffold_194_17
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15952..16437
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037243AC
HTH-type transcriptional regulator nsrR
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_194_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16640..17686
DNA (1047bp) protein (349aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000375DF06
secretion protein HlyD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17699..20920
DNA (3222bp) protein (1074aa)
Acriflavin resistance protein id=1328414 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
acriflavin resistance protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20917..21135
DNA (219bp) protein (73aa)
sulfurtransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA446
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21148..21561
DNA (414bp) protein (138aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637DEF
rhodanese-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_194_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21581..21841
DNA (261bp) protein (87aa)
glutaredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F6436
glutaredoxin, GrxC
Glutaredoxin, GrxC {ECO:0000313|EMBL:AAZ98353.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_194_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21926..22354
DNA (429bp) protein (143aa)
thioredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D8A71
thioredoxin
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22420..22875
DNA (456bp) protein (152aa)
preprotein translocase subunit SecB n=1 Tax=Thiobacillus thioparus RepID=UPI000367B31B
preprotein translocase subunit SecB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22886..23326
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371DB6B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_194_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23323..24324
DNA (1002bp) protein (334aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=1328422 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_194_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24447..26498
DNA (2052bp) protein (684aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAU1_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_194_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26519..27022)
DNA (504bp) protein (168aa)
RNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000367C4FB
RNA methyltransferase CspR
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_194_29
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27099..27329
DNA (231bp) protein (77aa)
Addiction module component, TIGR02574 family n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EGZ9_CHLL2
addiction module protein
Tax=BJP_IG2158_Thermincola_46_17
RTP_02272018_0_2um_scaffold_194_30
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

27326..27622
DNA (297bp) protein (99aa)
Plasmid stabilization system n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SBT8_PELPB
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ACF42613.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
Displaying items 1-30 of 79 in total

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