ggKbase home page

RTP_02272018_0_2um_scaffold_277

Search features with annotation key words

Displaying items 31-60 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_277_31
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23959..24738)
DNA (780bp) protein (260aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Thiobacillus thioparus RepID=UPI0003609AA0
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_277_32
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24751..25290)
DNA (540bp) protein (180aa)
hypothetical protein id=12493949 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_277_33
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25358..27742)
DNA (2385bp) protein (795aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A9257
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_34
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27873..28988)
DNA (1116bp) protein (372aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=1333553 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_35
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29126..30193)
DNA (1068bp) protein (356aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037112FE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_36
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30266..30907)
DNA (642bp) protein (214aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit id=1333551 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_37
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30913..31047)
DNA (135bp) protein (45aa)
entericidin ecnab id=12497946 bin=THIO_MID species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
entericidin ecnab
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_38
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31060..32463)
DNA (1404bp) protein (468aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33)
isopropylmalate isomerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C9FB4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_39
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32498..33661)
DNA (1164bp) protein (388aa)
MFS transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EA599
transporter
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_277_40
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33911..34282
DNA (372bp) protein (124aa)
Putative dissimilatory sulfite reductase id=1333543 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
dissimilatory sulfite reductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_41
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34571..35368
DNA (798bp) protein (266aa)
diguanylate cyclase id=12497949 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_42
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35365..36201
DNA (837bp) protein (279aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CB8DD
cobyrinic acid a,c-diamide synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_43
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36225..37064)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FA511
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_277_44
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37180..39519)
DNA (2340bp) protein (780aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367FAD9
Uncharacterized protein {ECO:0000313|EMBL:GAO34713.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
putative signaling protein
RTP_02272018_0_2um_scaffold_277_45
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39644..40105)
DNA (462bp) protein (154aa)
cold-shock DNA-binding domain-containing protein id=12493929 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_46

Not on your lists

comp(40178..40585)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=uncultured bacterium pFosLip RepID=Q1KL81_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ABF18936.1}; TaxID=380391 species="Bacteria; environmental samples.;" source="uncultured bacterium pFosLip.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_277_47
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40837..41106)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC36_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_48
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41244..41759)
DNA (516bp) protein (172aa)
hypothetical protein id=1342614 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_49
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41852..42790)
DNA (939bp) protein (313aa)
Putative uncharacterized protein id=1342616 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_50
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42969..43997)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372B7C1
hypothetical protein
Outer membrane protein {ECO:0000313|EMBL:AAZ96080.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_277_51
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44431..45264)
DNA (834bp) protein (278aa)
Membrane protein, putative n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A722_PELCD
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
RTP_02272018_0_2um_scaffold_277_52
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45261..45959)
DNA (699bp) protein (233aa)
Membrane protein, putative n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A722_PELCD
membrane protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
RTP_02272018_0_2um_scaffold_277_53
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46592..47311)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C594D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98085.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_277_54
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47343..47813)
DNA (471bp) protein (157aa)
Cytochrome c family protein, putative id=1342609 bin=GWE1_T_denit_62_9 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_55
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48268..48600
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003678745
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_277_56
unknown

Not on your lists

comp(48698..48892)
DNA (195bp) protein (65aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_277_57
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49114..51477
DNA (2364bp) protein (788aa)
Tex-like protein protein-like protein id=1342606 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_277_58
unknown

Not on your lists

comp(51687..52307)
DNA (621bp) protein (207aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_277_59
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52332..52835)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036124E0
hypothetical protein
Tax=CG_Hydro_01
RTP_02272018_0_2um_scaffold_277_60
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53191..53397)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E7S8_GEOSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT16111.1}; TaxID=443144 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
Displaying items 31-60 of 63 in total

View Taxonomy