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RTP_02272018_0_2um_scaffold_383

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_383_1
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..637)
DNA (636bp) protein (212aa)
DEAD-like helicase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5L4_9BURK
type III restriction protein res subunit
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
RTP_02272018_0_2um_scaffold_383_2
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(634..1692)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Cellvibrio sp. BR RepID=I3IE87_9GAMM
ribosomal protein L31
Tax=GWA2_Gallionellales_55_18_curated
RTP_02272018_0_2um_scaffold_383_3
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1689..3650)
DNA (1962bp) protein (654aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5L5_9BURK
DNA methylase N-4/N-6 domain protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_02272018_0_2um_scaffold_383_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3660..4892)
DNA (1233bp) protein (411aa)
glycolate oxidase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CD2D1
glcF; glycolate oxidase iron-sulfur subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4910..6040)
DNA (1131bp) protein (377aa)
FAD linked oxidase id=1333105 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glcE; glycolate oxidase FAD binding subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6040..7503)
DNA (1464bp) protein (488aa)
FAD-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F10C2
glycolate oxidase subunit GlcD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_383_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7686..8708
DNA (1023bp) protein (341aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037488E0
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:AAZ96004.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_383_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8709..9248
DNA (540bp) protein (180aa)
glycine cleavage system protein R n=1 Tax=Thiobacillus thioparus RepID=UPI00035F11A1
glycine cleavage system transcriptional repressor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_383_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9265..10230)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381AA85
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10267..10887)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365AA5A
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:AAZ96007.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_383_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11124..12461
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A915C
signal transduction protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_383_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12458..12748
DNA (291bp) protein (97aa)
endonuclease containing URI domain; K07461 putative endonuclease id=12495493 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
GIY - YIG exinuclease domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12943..14679)
DNA (1737bp) protein (579aa)
ribonucleotide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000372080D
ribonucleoside-diphosphate reductase subunit alpha
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14746..15729
DNA (984bp) protein (328aa)
serine/threonine protein kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035DFE4F
serine/threonine protein kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_15
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15769..16017
DNA (249bp) protein (83aa)
putative transcriptional regulator, AbrB family id=12495499 bin=THIO_HI species=uncultured Thiohalocapsa sp. PB-PSB1 genus=Thiohalocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transcriptional regulator, AbrB family
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_383_16
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16017..16445
DNA (429bp) protein (143aa)
hypothetical protein id=12495500 bin=THIO_HI species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_383_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16599..18365
DNA (1767bp) protein (589aa)
Asparagine synthetase id=1335206 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
asparagine synthase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18358..19608
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003679405
lytic murein transglycosylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19669..20055
DNA (387bp) protein (129aa)
Putative uncharacterized protein id=1335204 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20052..20426
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003804287
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20431..21105)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E2303
cytochrome C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21222..21410)
DNA (189bp) protein (63aa)
Membrane protein, putative id=1335201 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21449..21865)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372DD73
GreA/GreB family elongation factor
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21983..22621)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B1D4F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22645..23286
DNA (642bp) protein (214aa)
Metallo-beta-lactamase superfamily protein id=1335197 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
metallo-beta-lactamase superfamily protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_26
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23320..24684
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738CF3
SoxH - like protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_383_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24785..25669)
DNA (885bp) protein (295aa)
arginase (EC:3.5.3.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372D819
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_383_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25696..27150)
DNA (1455bp) protein (485aa)
gabD1; succinate-semialdehyde dehydrogenase (NADP+) (EC:1.2.1.16)
Putative succinic semialdehyde dehydrogenase id=1371503 bin=GWE1_T_denit_62_9 species=Azoarcus anaerobius genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_383_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27595..27948)
DNA (354bp) protein (118aa)
hypothetical protein id=12497673 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_383_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27945..28823)
DNA (879bp) protein (293aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
tartronate semialdehyde reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035CEDA4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 43 in total

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