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RTP_02272018_0_2um_scaffold_432

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_432_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) id=1327203 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..1352)
DNA (969bp) protein (323aa)
ABC transport system periplasmic component id=1327202 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC transporter periplasmic protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1369..2697)
DNA (1329bp) protein (443aa)
N-acetylglutamate synthase (EC:2.3.1.1)
Amino-acid acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01105}; EC=2.3.1.1 {ECO:0000256|HAMAP-Rule:MF_01105};; N-acetylglutamate synthase {ECO:0000256|HAMAP-Rule:MF_01105}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
N-acetylglutamate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00037BC65E
RTP_02272018_0_2um_scaffold_432_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2871..3305
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379A5FF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3364..4092)
DNA (729bp) protein (243aa)
Ribosomal RNA small subunit methyltransferase E id=1327200 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
16S ribosomal RNA methyltransferase RsmE
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4378..4935
DNA (558bp) protein (186aa)
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB549
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4937..5083
DNA (147bp) protein (49aa)
NodS-like protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367808E
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5062..5868
DNA (807bp) protein (269aa)
myo-inositol-1(or 4)-monophosphatase (EC:3.1.3.25)
inositol monophosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000381940B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6103..8088
DNA (1986bp) protein (662aa)
cbbT; transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] id=12494032 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
cbbT; transketolase (EC:2.2.1.1)
RTP_02272018_0_2um_scaffold_432_10
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8217..9215
DNA (999bp) protein (333aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMD3_THIDA
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_432_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9394..10572
DNA (1179bp) protein (393aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D91A3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_432_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10710..12143
DNA (1434bp) protein (478aa)
pykA; pyruvate kinase (EC:2.7.1.40)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F9DD3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12190..13257
DNA (1068bp) protein (356aa)
cbbA; fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
fructose-bisphosphate aldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D9D39
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_432_14
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13559..16651)
DNA (3093bp) protein (1031aa)
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS27_9GAMM
Type I deoxyribonuclease HsdR {ECO:0000313|EMBL:GAO34958.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
HsdR family type I site-specific deoxyribonuclease
RTP_02272018_0_2um_scaffold_432_15
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16632..17624)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS26_9GAMM
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_432_16
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17624..18232)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS25_9GAMM
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_432_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18363..18857)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036AB102
Uncharacterized protein {ECO:0000313|EMBL:EIL90746.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_432_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18854..19627)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VU54_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90745.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_432_19
GWA2_WOR_2_53_43_curated, WOR-2, Bacteria

Not on your lists

comp(19758..20498)
DNA (741bp) protein (247aa)
Uncharacterized protein id=5016969 bin=GWA2_OP3_53_43 species=Campylobacter showae genus=Campylobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
abortive phage resistance protein
Tax=GWA2_WOR_2_53_43_curated
RTP_02272018_0_2um_scaffold_432_20
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21102..22223)
DNA (1122bp) protein (374aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB28_GEOUR
XRE family plasmid maintenance system antidote protein
Tax=CG_Mariprof_02
RTP_02272018_0_2um_scaffold_432_21
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(22216..22545)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0003651765
Toxin-antitoxin system, toxin component, RelE family {ECO:0000313|EMBL:EKF05524.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
killer suppression protein HigA
RTP_02272018_0_2um_scaffold_432_22
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22580..23338)
DNA (759bp) protein (253aa)
hsdS; type I restriction enzyme S protein (EC:3.1.21.3)
Type I restriction enzyme S protein n=1 Tax=Thauera phenylacetica B4P RepID=N6Z145_9RHOO
Type I restriction enzyme S protein {ECO:0000313|EMBL:ENO97575.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
RTP_02272018_0_2um_scaffold_432_23
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23761..25452)
DNA (1692bp) protein (564aa)
N-6 DNA methylase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS22_9GAMM
N-6 DNA methylase
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_432_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25642..27624)
DNA (1983bp) protein (661aa)
ATP-dependent DNA helicase Rep (EC:3.6.1.-)
ATP-dependent DNA helicase Rep n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E9429
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_432_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27621..28022)
DNA (402bp) protein (134aa)
Glutaredoxin family protein id=1333500 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glutaredoxin family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_432_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28059..28922
DNA (864bp) protein (288aa)
apaH; diadenosine tetraphosphatase (EC:3.6.1.41)
biotin transporter BioY n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5087
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28858..29730)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379D83D
lyso-ornithine lipid acyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29727..30476)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D9E04
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_432_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30788..31720)
DNA (933bp) protein (311aa)
sugar kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D633F
carbohydrate kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_432_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31809..32186)
DNA (378bp) protein (126aa)
diacylglycerol kinase (EC:2.7.1.107)
diacylglycerol kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000368CB08
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 38 in total

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