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RTP_02272018_0_2um_scaffold_446

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_446_1
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..632
DNA (630bp) protein (210aa)
DNA methyltransferase {ECO:0000313|EMBL:AKH38261.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
N-6 DNA methylase id=3128861 bin=GWC2_Nitrospirae_57_13 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
N-6 DNA methylase
RTP_02272018_0_2um_scaffold_446_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

664..1500
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EB2DE
restriction endonuclease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_3
unknown

Not on your lists

2113..2355
DNA (243bp) protein (81aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_446_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2540..2848
DNA (309bp) protein (103aa)
ATP-dependent Clp protease ClpS n=1 Tax=Thiobacillus denitrificans RepID=UPI000365C2C8
ATP-dependent Clp protease adaptor protein ClpS
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2849..5107
DNA (2259bp) protein (753aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A21ED
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5268..5792
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FE195
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97191.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_446_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6152..7573
DNA (1422bp) protein (474aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] id=12493985 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7740..8192
DNA (453bp) protein (151aa)
flagellar transcriptional regulator FlhD n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D9751
transcriptional activator FlhD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8247..8885
DNA (639bp) protein (213aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003643E55
transcriptional activator FlhC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8907..9665
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CEF9C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9823..10683
DNA (861bp) protein (287aa)
Probable chemotaxis transmembrane protein MotA id=1332263 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar motor protein MotA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10729..11658
DNA (930bp) protein (310aa)
flagellar motor protein MotB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003739296
motB; flagellar motor protein MotB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11916..13058
DNA (1143bp) protein (381aa)
flagellar biosynthesis protein FlhB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ADE0A
flagellar biosynthetic protein FlhB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13055..15133
DNA (2079bp) protein (693aa)
flagellar biosynthesis protein FlhA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DF65E
flagellar biosynthesis protein FlhA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15130..16395
DNA (1266bp) protein (422aa)
flagellar biosynthesis regulator FlhF n=1 Tax=Thiobacillus thioparus RepID=UPI00037C9F8B
flhF; flagellar biosynthesis regulator FlhF
Putative flagellar biosynthetic protein FlhF {ECO:0000313|EMBL:AAZ97200.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_446_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16400..17269
DNA (870bp) protein (290aa)
Putative flagellar biosynthesis protein FlhG id=1357064 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthesis protein FlhG
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17273..18013
DNA (741bp) protein (247aa)
flagellar biosynthesis sigma factor n=1 Tax=Thiobacillus thioparus RepID=UPI00037DBD72
RNA polymerase sigma-70 factor
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17995..18732
DNA (738bp) protein (246aa)
Chemotaxis transmembrane protein MotA id=1357066 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
motC; flagellar motor protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18732..19508
DNA (777bp) protein (259aa)
flagellar motor protein MotD; K02557 chemotaxis protein MotB id=12493964 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
flagellar motor protein MotD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19570..21951
DNA (2382bp) protein (794aa)
PIM1 peptidase (EC:3.4.21.53)
Lon protease n=1 Tax=Thiobacillus thioparus RepID=UPI000366D8FE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21990..22817
DNA (828bp) protein (276aa)
segregation and condensation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000379C683
condensin subunit ScpA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22798..23490
DNA (693bp) protein (231aa)
Predicted transcriptional regulator id=1357074 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
condensin subunit ScpB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23493..24383
DNA (891bp) protein (297aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] id=12493951 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24706..25371)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037798DE
CmpX protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25545..26030
DNA (486bp) protein (162aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) and Response Regulator Receiver modulation n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJE2_THIDA
response regulator receiver modulated diguanylate cyclase/phosphodiesterase
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) and Response Regulator Receiver modulation {ECO:0000313|EMBL:AAZ97222.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_446_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26027..26929)
DNA (903bp) protein (301aa)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.72)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5A6D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26946..28076)
DNA (1131bp) protein (377aa)
succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
succinyl-diaminopimelate desuccinylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000361B983
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_446_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28083..28430)
DNA (348bp) protein (116aa)
arsenate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B8342
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_446_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28512..30308
DNA (1797bp) protein (599aa)
metal ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI000381B763
ABC-type transport system ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_446_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30308..31597
DNA (1290bp) protein (430aa)
Putative integral membrane protein id=1319192 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
integral membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 37 in total

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