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RTP_02272018_0_2um_scaffold_458

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_458_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..625)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376D8B3
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(680..1003)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363DA3B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98404.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_458_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1054..1782)
DNA (729bp) protein (243aa)
decarboxylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000378FDA9
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_458_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1809..4565
DNA (2757bp) protein (919aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase A id=1360714 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4701..5186)
DNA (486bp) protein (162aa)
large conductance mechanosensitive channel protein MscL n=1 Tax=Thiobacillus denitrificans RepID=UPI000375DD36
large-conductance mechanosensitive channel
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5270..6322
DNA (1053bp) protein (351aa)
tRNA-dihydrouridine synthase B n=1 Tax=Thiobacillus thioparus RepID=UPI0003722868
dihydrouridine synthase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6346..6585
DNA (240bp) protein (80aa)
Transcriptional Regulator, Fis family id=1360709 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Fis family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6594..8153
DNA (1560bp) protein (520aa)
IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10)
IMP cyclohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI000360A556
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_458_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8279..9556
DNA (1278bp) protein (426aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
phosphoribosylamine--glycine ligase n=1 Tax=Thiobacillus thioparus RepID=UPI0003688CF6
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9556..10482
DNA (927bp) protein (309aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic id=1354143 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..13707
DNA (3222bp) protein (1074aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B28A9
Probable transmembrane protein {ECO:0000313|EMBL:AAZ98415.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
transmembrane protein
RTP_02272018_0_2um_scaffold_458_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13771..14973
DNA (1203bp) protein (401aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036E767F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_458_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14970..15635
DNA (666bp) protein (222aa)
LuxR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000376AAD5
LuxR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_14
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..16973
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YRW9_9CHLB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_458_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17509..18330)
DNA (822bp) protein (274aa)
Putative uncharacterized protein id=1344879 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18338..19777)
DNA (1440bp) protein (480aa)
uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107)
sirohydrochlorin ferrochelatase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E0442
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19783..20148)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EDC73
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20166..21584)
DNA (1419bp) protein (473aa)
hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase (EC:6.3.5.9 6.3.5.-)
Cobyrinic acid A,C-diamide synthase id=1344882 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21628..22830)
DNA (1203bp) protein (401aa)
Molybdopterin oxidoreductase, membrane subunit id=1344883 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molybdopterin oxidoreductase, membrane subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22854..23633)
DNA (780bp) protein (260aa)
4Fe-4S ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037758DA
iron-sulfur cluster protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23630..24115)
DNA (486bp) protein (162aa)
Putative uncharacterized protein id=1344885 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24130..26091)
DNA (1962bp) protein (654aa)
glutamate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037195B3
Iron-sulfur cluster-binding protein, GltD family {ECO:0000313|EMBL:AAZ98430.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
glutamate synthase (NADPH) small subunit
RTP_02272018_0_2um_scaffold_458_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26147..27679)
DNA (1533bp) protein (511aa)
Reductase, iron-sulfur binding subunit, putative id=1364805 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
reductase, iron-sulfur binding subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_458_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27732..28475)
DNA (744bp) protein (248aa)
Putative DsrM protein id=1364806 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DsrM protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_458_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28615..28950)
DNA (336bp) protein (112aa)
putative sulfite reductase; K11179 tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] id=12494747 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
sulfite reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28974..29273)
DNA (300bp) protein (100aa)
DsrH protein id=1364808 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DsrH protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29284..29679)
DNA (396bp) protein (132aa)
sulfur oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037715B8
DsrF protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_458_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29691..30050)
DNA (360bp) protein (120aa)
DsrE protein; K07235 tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] id=12494750 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DsrE protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_458_29
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30126..31196)
DNA (1071bp) protein (357aa)
sulfite reductase, dissimilatory-type subunit beta (EC:1.8.99.3); K11181 sulfite reductase, dissimilatory-type beta subunit [EC:1.8.99.3] id=12496405 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfite reductase, dissimilatory-type subunit beta (EC:1.8.99.3)
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_458_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31263..32564)
DNA (1302bp) protein (434aa)
sulfite reductase, dissimilatory-type subunit alpha (EC:1.8.99.3)
Sulfite reductase, dissimilatory-type alpha subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG18_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 55 in total

View Taxonomy