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RTP_02272018_0_2um_scaffold_479

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_479_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104..487)
DNA (384bp) protein (128aa)
invasion gene expression up-regulator, SirB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036851A3
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AAZ96897.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_479_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(490..1155)
DNA (666bp) protein (222aa)
2-phosphoglycolate phosphatase (EC:3.1.3.18)
phosphoglycolate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037504EB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_479_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1145..1843)
DNA (699bp) protein (233aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC44D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1852..3165)
DNA (1314bp) protein (438aa)
N-ethylammeline chlorohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00035FB450
N-ethylammeline chlorohydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3273..5831
DNA (2559bp) protein (853aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA gyrase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D33D9
RTP_02272018_0_2um_scaffold_479_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5835..6914
DNA (1080bp) protein (360aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] id=12495621 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoserine aminotransferase (EC:2.6.1.52)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6907..8085
DNA (1179bp) protein (393aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
3-phosphoglycerate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CE5FD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_479_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8090..9208
DNA (1119bp) protein (373aa)
chorismate mutase (EC:4.2.1.51 5.4.99.5)
prephenate dehydratase n=1 Tax=Thiobacillus thioparus RepID=UPI00036136EF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_479_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9205..10314
DNA (1110bp) protein (370aa)
histidinol-phosphate aminotransferase (EC:2.6.1.-)
histidinol-phosphate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000360D956
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10311..11174
DNA (864bp) protein (288aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] id=12497449 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
prephenate dehydrogenase (EC:1.3.1.12)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11174..12478
DNA (1305bp) protein (435aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] id=12495616 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12475..13170
DNA (696bp) protein (232aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] id=12495615 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytidylate kinase (EC:2.7.4.14)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_479_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13253..14974
DNA (1722bp) protein (574aa)
30S ribosomal protein S1 n=1 Tax=Thiobacillus denitrificans RepID=UPI000380376F
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_479_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14977..15261
DNA (285bp) protein (95aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B3B2F
integration host factor subunit beta
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15432..15719
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B7A1F
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15726..16892
DNA (1167bp) protein (389aa)
tetratricopeptide repeat-containing protein id=12495611 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tetratricopeptide repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_479_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16974..17669
DNA (696bp) protein (232aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
orotidine 5''''-phosphate decarboxylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003696F87
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_479_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17680..19002
DNA (1323bp) protein (441aa)
UDP-glucose dehydrogenase (EC:1.1.1.22)
UDP-glucose dehydrogenase id=1332583 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_479_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19006..19893
DNA (888bp) protein (296aa)
cysM; cysteine synthase B (EC:2.5.1.47)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
cysteine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000372BEE4
RTP_02272018_0_2um_scaffold_479_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19952..20233
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2ESK9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20236..20523
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036DA55F
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_479_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20555..21910
DNA (1356bp) protein (452aa)
DNA repair protein RadA n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686D0E
DNA repair protein RadA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_479_23
Gallibacterium anatis, Gallibacterium, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22005..22283
DNA (279bp) protein (93aa)
hypothetical protein; K07334 proteic killer suppression protein id=12496309 bin=THIO_MID species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Excinuclease ABC subunit A {ECO:0000313|EMBL:KGQ33749.1}; TaxID=750 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Gallibacterium.;" source="Gallibacterium anatis.;"
plasmid maintenance system killer family protein
RTP_02272018_0_2um_scaffold_479_24
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22296..22598
DNA (303bp) protein (101aa)
Addiction module antidote protein HigA n=1 Tax=Kingella denitrificans ATCC 33394 RepID=F0EYD5_9NEIS
plasmid maintenance system antidote protein
Plasmid maintenance system antidote protein {ECO:0000313|EMBL:BAO30994.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
RTP_02272018_0_2um_scaffold_479_25
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22868..23101
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00034CC1E9
Putative addiction module component
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_479_26
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23098..23388
DNA (291bp) protein (97aa)
Plasmid stabilization system protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WJ51_9CYAN
Plasmid stabilization system protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_479_27
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23606..26212
DNA (2607bp) protein (869aa)
Transposase IS66 n=1 Tax=Methylomonas methanica (strain MC09) RepID=F9ZXZ5_METMM
transposase IS66
Transposase IS66 {ECO:0000313|EMBL:AEF98574.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_02272018_0_2um_scaffold_479_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26377..28008)
DNA (1632bp) protein (544aa)
Peptide chain release factor 3 id=1332591 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prfC; peptide chain release factor 3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_479_trna_1
unknown

Not on your lists

comp(28163..28236)
DNA (74bp)
transferRNA Arg
RTP_02272018_0_2um_scaffold_479_29
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28468..29496
DNA (1029bp) protein (343aa)
Integrase n=1 Tax=Thauera sp. 63 RepID=N6Y7Z7_9RHOO
Shufflon-specific DNA recombinase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
Displaying items 1-30 of 41 in total

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