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RTP_02272018_0_2um_scaffold_487

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_487_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240..599)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Acinetobacter haemolyticus NIPH 261 RepID=N9GW24_ACIHA
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(599..1402)
DNA (804bp) protein (268aa)
hypothetical protein id=12493261 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1399..2595)
DNA (1197bp) protein (399aa)
3-oxoacyl-(acyl carrier protein) synthase I (EC:2.3.1.41); K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] id=12493260 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
3-oxoacyl-ACP synthase (EC:2.3.1.41)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_4
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(2653..3330)
DNA (678bp) protein (226aa)
phosphoesterase PA-phosphatase-like protein id=12493259 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoesterase PA-phosphatase-like protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
RTP_02272018_0_2um_scaffold_487_5
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(3397..4200)
DNA (804bp) protein (268aa)
polysaccharide deacetylase id=12493258 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
polysaccharide deacetylase
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
RTP_02272018_0_2um_scaffold_487_6
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(4193..6544)
DNA (2352bp) protein (784aa)
hypothetical protein id=12493257 bin=THIO_HI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
RTP_02272018_0_2um_scaffold_487_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6541..7128)
DNA (588bp) protein (196aa)
hypothetical protein id=12493256 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98702.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_487_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7132..8073)
DNA (942bp) protein (314aa)
putative lauroyl/myristoyl acyltransferase id=12493255 bin=THIO_HI species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
lauroyl/myristoyl acyltransferase
Putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis {ECO:0000313|EMBL:AAZ98701.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_487_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8070..8384)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036A4712
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8381..9742)
DNA (1362bp) protein (454aa)
CoA ligase id=12493253 bin=THIO_HI species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
CoA ligase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9761..10438)
DNA (678bp) protein (226aa)
Transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SER4_THIDA
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10435..10719)
DNA (285bp) protein (95aa)
acyl carrier protein
acyl carrier protein; K02078 acyl carrier protein id=12493251 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Acyl carrier protein, putative {ECO:0000313|EMBL:AAZ98697.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_487_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11202..13580)
DNA (2379bp) protein (793aa)
Type III restriction protein res subunit n=1 Tax=Thauera phenylacetica B4P RepID=N6ZRQ4_9RHOO
type III restriction protein res subunit
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
RTP_02272018_0_2um_scaffold_487_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13577..13912)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5D8_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31831.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
RTP_02272018_0_2um_scaffold_487_15
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13909..14460)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNT2_9BURK
Hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_487_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14473..15507)
DNA (1035bp) protein (345aa)
Virulence protein-like protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0B2_9SPHN
virulence protein-like protein
Virulence protein-like protein {ECO:0000313|EMBL:AGH49430.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
RTP_02272018_0_2um_scaffold_487_17
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15507..18203)
DNA (2697bp) protein (899aa)
Type III restriction enzyme, res subunit n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RY34_9BURK
Restriction endonuclease {ECO:0000313|EMBL:EXI76487.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
restriction endonuclease
RTP_02272018_0_2um_scaffold_487_18
uncultured Desulfofustis sp. PB-SRB1, Desulfofustis, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18200..18496)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4J9Z7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESQ09140.1}; TaxID=1385624 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfofustis; environmental samples.;" source="uncultured Desulfofustis sp. PB-SRB1.;"
plasmid stabilization system
RTP_02272018_0_2um_scaffold_487_19
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18496..18702)
DNA (207bp) protein (69aa)
Addiction module component, TIGR02574 family n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A1F7_METMM
Addiction module protein {ECO:0000313|EMBL:KFD41359.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
addiction module protein
RTP_02272018_0_2um_scaffold_487_20
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18742..20388)
DNA (1647bp) protein (549aa)
Adenine specific DNA methylase n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F122_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGM52844.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
adenine specific DNA methylase Mod
RTP_02272018_0_2um_scaffold_487_21
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20894..22057)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z0P0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC22381.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
filamentation induced by cAMP protein fic
RTP_02272018_0_2um_scaffold_487_trna_1
unknown

Not on your lists

comp(22177..22249)
DNA (73bp)
transferRNA Ala
RTP_02272018_0_2um_scaffold_487_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22269..22634)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003791AC0
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_487_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22631..23428)
DNA (798bp) protein (266aa)
Prolipoprotein diacylglyceryl transferase id=1343563 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prolipoprotein diacylglyceryl transferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_487_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23528..26356
DNA (2829bp) protein (943aa)
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase id=1343564 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_487_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26377..26982
DNA (606bp) protein (202aa)
Probable partition-related protein id=1343565 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
partition-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_487_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27311..27889)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369B00C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_487_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27963..29978
DNA (2016bp) protein (672aa)
thioredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI0003622CE7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_487_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30119..30433
DNA (315bp) protein (105aa)
cytochrome c transmembrane protein id=12496166 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cytochrome C transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_487_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30553..32064
DNA (1512bp) protein (504aa)
alanine glycine permease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003794EF0
sodium:alanine symporter
Sodium:alanine symporter {ECO:0000313|EMBL:AAZ98678.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 35 in total

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