ggKbase home page

RTP_02272018_0_2um_scaffold_492

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_492_1
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)
Putative tRNA nucleotidyltransferase/poly(A) polymerase id=1334561 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_02272018_0_2um_scaffold_492_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(425..595)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364B5AC
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

687..1673
DNA (987bp) protein (329aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DF960
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1681..2736)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036341CD
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_5
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2891..3391
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036051A5
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_492_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3419..3580
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364547A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_492_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3680..4174
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003607CE5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_trna_1
unknown

Not on your lists

comp(4389..4475)
DNA (87bp)
transferRNA Ser
RTP_02272018_0_2um_scaffold_492_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4587..5954
DNA (1368bp) protein (456aa)
murein transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CFA78
extracellular solute-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_492_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5956..7236)
DNA (1281bp) protein (427aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYS_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_492_10
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7359..7730)
DNA (372bp) protein (124aa)
Uncharacterized protein id=4443887 bin=GWA2_Deltaproteo_65_63 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
RTP_02272018_0_2um_scaffold_492_11
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7727..7957)
DNA (231bp) protein (77aa)
Uncharacterized protein id=1700079 bin=GWB2_Deltaproteobacteria_65_81 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
RTP_02272018_0_2um_scaffold_492_12
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8215..8601)
DNA (387bp) protein (129aa)
PilT protein domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IRG8_9GAMM
pilT; Pilus retraction motor protein PilT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_492_13
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8598..8843)
DNA (246bp) protein (82aa)
Antitoxin of a toxin/antitoxin system protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IRG7_9GAMM
Antitoxin of a toxin/antitoxin system protein {ECO:0000313|EMBL:EGW22178.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Prevent-host-death protein Phd/YefM
RTP_02272018_0_2um_scaffold_492_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8933..12430)
DNA (3498bp) protein (1166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA624
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
condensin subunit Smc
RTP_02272018_0_2um_scaffold_492_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12521..12940
DNA (420bp) protein (140aa)
7-cyano-7-deazaguanine reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D462A
7-cyano-7-deazaguanine reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12945..14210
DNA (1266bp) protein (422aa)
sugar kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003616A39
FGGY family sugar kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_17
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14407..16359
DNA (1953bp) protein (651aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJU0_9PROT
Diguanylate cyclase {ECO:0000313|EMBL:KIF82410.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
diguanylate cyclase domain protein
RTP_02272018_0_2um_scaffold_492_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16428..16829)
DNA (402bp) protein (134aa)
Putative uncharacterized protein id=1367415 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_492_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16822..17724)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BFF10
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_20
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17780..19081
DNA (1302bp) protein (434aa)
succinyldiaminopimelate transaminase (EC:2.6.1.-)
Putative AMINOTRANSFERASE n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R2C7_CUPTR
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_492_21
unknown

Not on your lists

19084..19362
DNA (279bp) protein (93aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_492_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19396..20220
DNA (825bp) protein (275aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037759A9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_492_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20241..21017
DNA (777bp) protein (259aa)
hypothetical protein id=12495559 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21020..21364
DNA (345bp) protein (115aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003782C60
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21993..22490)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003635963
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_492_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22487..22960)
DNA (474bp) protein (158aa)
tRNA-adenosine deaminase (EC:3.5.4.-)
CRISPR-associated protein Csn1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E76EF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_492_27
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

23018..23224
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4IYC0_9DELT
AbrB family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
RTP_02272018_0_2um_scaffold_492_28
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23265..24242)
DNA (978bp) protein (326aa)
Integron integrase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CM05_SIDLE
integron integrase
Tax=BJP_IG2158_Methylococcales_50_91
RTP_02272018_0_2um_scaffold_492_29
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24336..24617
DNA (282bp) protein (94aa)
Plasmid maintenance system killer n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FTM4_PHAMO
plasmid maintenance system killer protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
Displaying items 1-30 of 43 in total

View Taxonomy