ggKbase home page

RTP_02272018_0_2um_scaffold_635

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_635_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..833)
DNA (831bp) protein (277aa)
adenylylsulfate reductase subunit alpha (EC:1.8.99.2)
Adenylylsulfate reductase, alpha subunit n=2 Tax=Thiobacillus denitrificans RepID=Q3SKF6_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(861..1334)
DNA (474bp) protein (158aa)
adenylylsulfate reductase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000378694E
aprB; adenylylsulfate reductase subunit beta
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1500..2708)
DNA (1209bp) protein (403aa)
sat; sulfate adenylyltransferase (EC:2.7.7.4)
sulfate adenylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000378CF10
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2876..3289)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EF174
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3361..4122)
DNA (762bp) protein (254aa)
Putative uncharacterized protein id=1345308 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4124..4771
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003647CF7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4932..5735)
DNA (804bp) protein (268aa)
GTP cyclohydrolase (EC:3.5.4.16)
GTP cyclohydrolase folE2 id=1345306 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5800..7656)
DNA (1857bp) protein (619aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A610D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_635_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7779..8624)
DNA (846bp) protein (282aa)
farnesyl-diphosphate synthase (EC:2.5.1.10)
geranyltranstransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003789D6B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..8901)
DNA (243bp) protein (81aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
exodeoxyribonuclease n=1 Tax=Thiobacillus denitrificans RepID=UPI000377587F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_635_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9523..10635
DNA (1113bp) protein (371aa)
Rieske iron-sulfur protein 2Fe-2S subunit id=1362780 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Rieske iron-sulfur protein 2Fe-2S subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10709..11575
DNA (867bp) protein (289aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037531B7
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11603..11971
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF2A1
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12105..12353
DNA (249bp) protein (83aa)
Carbonic anhydrase, eukaryotic id=1362777 bin=GWE1_T_denit_62_9 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12348..13100)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037092A4
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_635_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13097..13960)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361AD1D
thioredoxin protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13962..14921)
DNA (960bp) protein (320aa)
prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase id=1363608 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15158..15547
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C6310
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_635_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15652..16686
DNA (1035bp) protein (345aa)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F2F6C
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16713..16976
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E18B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96843.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_635_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16991..19198
DNA (2208bp) protein (736aa)
diguanylate cyclase/phosphodiesterase id=12495183 bin=THIO_HI species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_635_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19320..19514)
DNA (195bp) protein (65aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTJ0_SIDLE
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19517..20002)
DNA (486bp) protein (162aa)
hypothetical protein id=12493363 bin=THIO_HI species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_24
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19990..20202)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F2L9_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDK99760.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
RTP_02272018_0_2um_scaffold_635_25

Not on your lists

comp(20246..22903)
DNA (2658bp) protein (886aa)
Aconitate hydratase (Citrate hydro-lyase) (Aconitase) {ECO:0000313|EMBL:CBI09861.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CBI09861.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
acnA2; aconitate hydratase (EC:4.2.1.3)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F58A9
RTP_02272018_0_2um_scaffold_635_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22983..23333)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D425C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96845.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_635_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23344..24855)
DNA (1512bp) protein (504aa)
lysyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003717441
lysyl-tRNA synthetase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_635_28
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24871..25305)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJT RepID=UPI000373713A
twitching motility protein PilT
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_635_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25305..25550)
DNA (246bp) protein (82aa)
prevent-host-death protein id=12494620 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:AAZ96848.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_635_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25623..27422
DNA (1800bp) protein (600aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKD6_THIDA
ATP-dependent DNA helicase RecQ
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AAZ96849.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 34 in total

View Taxonomy