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RTP_02272018_0_2um_scaffold_639

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_639_1
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..333)
DNA (300bp) protein (100aa)
Putative uncharacterized protein id=1776680 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
RTP_02272018_0_2um_scaffold_639_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(756..3272)
DNA (2517bp) protein (839aa)
phosphorylase (EC:2.4.1.1)
glycogen phosphorylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FE153
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_639_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3289..4761)
DNA (1473bp) protein (491aa)
Glycogen synthase id=1332705 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycogen/starch synthase, ADP-glucose type
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_639_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..7087)
DNA (2208bp) protein (736aa)
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB id=1332706 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7084..8451)
DNA (1368bp) protein (456aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase id=1332707 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8451..10175)
DNA (1725bp) protein (575aa)
Glycosyl hydrolase family 57 id=1332708 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycosyl hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10165..11484)
DNA (1320bp) protein (440aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] id=12496742 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11534..12502)
DNA (969bp) protein (323aa)
glucokinase (EC:2.7.1.2)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B9A57
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_639_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12511..14193)
DNA (1683bp) protein (561aa)
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase 2 id=1332711 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14655..15638
DNA (984bp) protein (328aa)
Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase) id=1332712 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
nucleoside-diphosphate-sugar epimerase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_11
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15650..17041
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377E47E
glycosyl transferase
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
RTP_02272018_0_2um_scaffold_639_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17038..18849
DNA (1812bp) protein (604aa)
Tetratricopeptide repeat domain protein id=1332715 bin=GWE1_T_denit_62_9 species=Legionella longbeachae genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_13
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19292..19786)
DNA (495bp) protein (165aa)
GCN5-related N-acetyltransferase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JL78_9GAMM
GCN5-like N-acetyltransferase
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_639_14
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19790..20056)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JL77_9GAMM
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
RTP_02272018_0_2um_scaffold_639_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20859..21110
DNA (252bp) protein (84aa)
id=12493427 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
RTP_02272018_0_2um_scaffold_639_16
unknown

Not on your lists

21082..21381
DNA (300bp) protein (100aa)
id=12493428 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
RTP_02272018_0_2um_scaffold_639_17
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21852..22172
DNA (321bp) protein (107aa)
integrase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00035F48C6
Phage integrase family protein {ECO:0000313|EMBL:AIO87635.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
phage integrase family protein
RTP_02272018_0_2um_scaffold_639_trna_1
unknown

Not on your lists

comp(22244..22327)
DNA (84bp)
transferRNA Leu
RTP_02272018_0_2um_scaffold_639_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22422..23447
DNA (1026bp) protein (342aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1343001 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
queuosine biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23444..24547
DNA (1104bp) protein (368aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=1343002 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25189..25506
DNA (318bp) protein (106aa)
preprotein translocase subunit YajC n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C10BF
protein translocase subunit yajC
Preprotein translocase protein YajC {ECO:0000313|EMBL:AAZ98031.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_639_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25635..27449
DNA (1815bp) protein (605aa)
preprotein translocase subunit SecD n=1 Tax=Thiobacillus thioparus RepID=UPI000375B578
preprotein translocase SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_639_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27459..28391
DNA (933bp) protein (311aa)
Protein translocase subunit SecF id=1343006 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secF; preprotein translocase subunit SecF
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28489..29097
DNA (609bp) protein (203aa)
Putative integral membrane protein dedA-like protein id=1343007 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
integral membrane protein dedA-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29182..29841)
DNA (660bp) protein (220aa)
Pyridoxine 5'-phosphate synthase id=1343008 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
pyridoxine 5'-phosphate synthase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29838..30569)
DNA (732bp) protein (244aa)
DNA repair protein RecO id=1343009 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
recO; DNA repair protein RecO
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30667..31551)
DNA (885bp) protein (295aa)
GTPase Era id=1343010 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GTPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31544..32227)
DNA (684bp) protein (228aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 id=1343011 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_639_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32235..32636)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376AB40
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_639_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32647..33456)
DNA (810bp) protein (270aa)
signal peptidase I (EC:3.4.21.89)
signal peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003777F14
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 35 in total

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