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RTP_02272018_0_2um_scaffold_688

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_688_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159..878
DNA (720bp) protein (240aa)
laccase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003753A13
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1016..1855)
DNA (840bp) protein (280aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003682D17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_688_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1926..4517
DNA (2592bp) protein (864aa)
protein disaggregation chaperone n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BC24
ClpB protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_4
unknown

Not on your lists

4717..4827
DNA (111bp) protein (37aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_688_5
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4824..7352
DNA (2529bp) protein (843aa)
Glycogen phosphorylase {ECO:0000313|EMBL:AIA55165.1}; EC=2.4.1.1 {ECO:0000313|EMBL:AIA55165.1};; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
Glycogen phosphorylase n=2 Tax=Acidithiobacillus caldus RepID=F9ZND5_ACICS
glycogen phosphorylase
RTP_02272018_0_2um_scaffold_688_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7901..8431)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5E7A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9130..10866
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363E572
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96786.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_688_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10929..14585
DNA (3657bp) protein (1219aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003655574
Putative signal peptide protein {ECO:0000313|EMBL:AAZ96787.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
signal peptide protein
RTP_02272018_0_2um_scaffold_688_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14689..15432
DNA (744bp) protein (248aa)
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11); K03787 5'-nucleotidase [EC:3.1.3.5] id=12494520 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
surE; stationary phase survival protein SurE (EC:3.1.3.5 3.1.3.6 3.6.1.11)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15417..16097
DNA (681bp) protein (227aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000255|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000255|HAMAP-Rule:MF_00090}; Short=PIMT {ECO:0000255|HAMAP-Rule:MF_00090};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
protein-L-isoaspartate O-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3086
RTP_02272018_0_2um_scaffold_688_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16112..17020
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D2641
peptidoglycan-binding protein LysM
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:AAZ96790.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_688_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17017..17961
DNA (945bp) protein (315aa)
RNA polymerase sigma factor RpoS n=1 Tax=Thiobacillus thioparus RepID=UPI0003782783
RNA polymerase sigma factor RpoS
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_688_13
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17966..18937
DNA (972bp) protein (324aa)
histone deacetylase family protein id=12496990 bin=THIO_MID species=unknown genus=unknown taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
histone deacetylase
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_688_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18934..19587
DNA (654bp) protein (218aa)
haloacid dehalogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC10E
HAD family hydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_688_15
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(20104..20331)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Vibrio vulnificus RepID=UPI000379089C
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
RTP_02272018_0_2um_scaffold_688_16
unknown

Not on your lists

comp(20418..20612)
DNA (195bp) protein (65aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_688_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21266..21652)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003727D7B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21811..23055
DNA (1245bp) protein (415aa)
aminotransferase (EC:2.6.1.-)
Probable aspartate transaminase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKI6_THIDA
Probable aspartate transaminase {ECO:0000313|EMBL:AAZ96795.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_688_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23080..24393
DNA (1314bp) protein (438aa)
homoserine dehydrogenase (EC:1.1.1.3)
homoserine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI0003646415
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24393..25817
DNA (1425bp) protein (475aa)
threonine synthase (EC:4.2.3.1)
threonine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000376EC42
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_688_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25914..26522
DNA (609bp) protein (203aa)
Probable glutathione S-transferase id=1324818 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glutathione S-transferase
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 21 items

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