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RTP_02272018_0_2um_scaffold_851

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_851_trna_1
unknown

Not on your lists

25..98
DNA (74bp)
transferRNA Val
RTP_02272018_0_2um_scaffold_851_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

298..2205
DNA (1908bp) protein (636aa)
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
threonyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003775998
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_851_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2386..2850
DNA (465bp) protein (155aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12495543 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
translation initiation factor 3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2984..3181
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Thiobacillus RepID=RL35_THIDA
50S ribosomal protein L35
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_851_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3194..3553
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C509D
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_851_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3748..4770
DNA (1023bp) protein (341aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI000382E529
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4783..7128
DNA (2346bp) protein (782aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI000373E3B5
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_851_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7164..7475
DNA (312bp) protein (104aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003723101
ihfA; integration host factor subunit alpha
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7453..7812
DNA (360bp) protein (120aa)
Transcriptional Regulator, MerR family id=1348720 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
MerR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_trna_2
unknown

Not on your lists

7860..7933
DNA (74bp)
transferRNA Pro
RTP_02272018_0_2um_scaffold_851_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8143..8727
DNA (585bp) protein (195aa)
superoxide dismutase, Fe (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=12497367 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
superoxide dismutase, Fe (EC:1.15.1.1)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_851_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9597..10880
DNA (1284bp) protein (428aa)
CzcC family heavy metal RND efflux outer membrane protein id=12498649 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
CzcC family heavy metal RND efflux outer membrane protein
Heavy metal RND efflux outer membrane protein, CzcC family {ECO:0000313|EMBL:AAZ97288.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_851_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10877..12382
DNA (1506bp) protein (502aa)
Secretion protein HlyD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ80_THIDA
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:AAZ97287.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_851_12
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12379..15537
DNA (3159bp) protein (1053aa)
Heavy metal efflux pump CzcA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ81_THIDA
cation transporter
Cation transporter {ECO:0000313|EMBL:AJP49195.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_02272018_0_2um_scaffold_851_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15626..15934
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743809
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_14
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15959..16168
DNA (210bp) protein (70aa)
Transcriptional regulator with Fis-type helix-turn-helix motif id=12495553 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ABM35709.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
RTP_02272018_0_2um_scaffold_851_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16243..17133)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CA19F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97011.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_851_16
unknown

Not on your lists

comp(17404..17631)
DNA (228bp) protein (76aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_851_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17888..18736
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHG6_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97920.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_851_18
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18841..19227
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXU5_LEPCP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
RTP_02272018_0_2um_scaffold_851_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19551..20750)
DNA (1200bp) protein (400aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI0003623CEB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_851_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20747..21949)
DNA (1203bp) protein (401aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI00036B9511
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_851_21
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21959..22255)
DNA (297bp) protein (99aa)
Putative uncharacterized protein id=1317117 bin=GWE1_T_denit_62_9 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prophage antirepressor
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
Displaying 23 items

View Taxonomy