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RTP_02272018_0_2um_scaffold_485_15

Organism: RTP_02272018_0_2um_Hydrogenophilales_62_27

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: 13622..17020

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.3
  • Coverage: 1119.0
  • Bit_score: 1899
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Thiobacillus thioparus RepID=UPI00036D1DB7 similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 1132.0
  • Bit_score: 2018
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 85.3
  • Coverage: 1119.0
  • Bit_score: 1899
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3399
ATGACGTTCTTCTTCCCCACATCCCTTCCTTCCGGTCCGCCGCGCAGCCAGTCCGGCCTCGCCGGCGCCGCCGATGCGCTTTATCTGGCCGAACTGGCCCGACAGGCCGGGCCGCTGGTGGTGGTGTGCGCCAGCGCGTGGGACGCCAACCGCCTGGCCGAGGAACTGCGCTGGTTCGATTCCGGGTTGCGCGTCTGCAACTTTCCCGACTGGGAAACCCTGCCCTACGATACGTTTTCGCCCCACCCGGACCTGATTTCCGAGCGGCTGGCGACGCTGTACCAGATTTCGCGCGGCGAGTTCGACGTGGCCGTGGTGGCGCTGTCGACCGCGCTGTACCGGCTGGCGCCGCCGGCGTTTCTGGCCGCCCACACCTTCTTCCTCAAGCAGAAGGACACGCTCGACGAAGCCGCTTTCCGCGCGCAGATGATGCTAGGCGGCTACACCCACGTGAATCAGGTGTTTGCGCCGGGCGAGTTTTCAGTCCGCGGCGGGCTGATCGACCTGTTTCCCATGGGCAGCGCCCTGCCCTACCGCATCGACCTGTTCGACAACGAAATCGAGACGCTGCGGGCGTTCGACGTCGATACCCAGCGCAGCATCTACCCGGTGGGCGAGGTGCGGCTGCTGCCCGCGCGCGAGTTTCCGCTCGACGAGACCGGCATCACCCGCTTCCGGCAGAATTTCCGCGAACGCTTCGAGGGCGACCCGTCCAAGTCCAAGCTGTACAAGGATGTCAGCAACGGCCTCGCGCCGGCCGGCATCGAGTACTACCTGCCGCTGTTTTTCGAGGACACGGCCACCCTGTTCGACTACCTGCCCACGACCACGCGTCTGGTCGCGCACGGCGCGCTCGACCCGGCGGGCCAGGCATTCTGGGCCGATGCGCAAAGCCGCCATCGCCTGCTGTCCGGCGACAAGGACCGCCCGCTGCTGCCACCGGCCGATCTGTTTTTGCAGACCGATGCGTTTTTCAGCCTGGCCAAGGCTTACACGCGGCTGGATATCGAGCAGGCCGGCAGCGGGCCGACGCATCCCGTCCCGCCGATTTCCGTCGACCGCCGCGAGGCGCACCCGGTTGCGCGCCTCGCCGGCTTCATCGACAGCTTCAAGGGCACCACCCTGATCGTTGCGCCCTCGGCCGGGCGGCGCGAAACCCTGCACGAATACCTGGCCGAGCACGGCATCCGGGCCACGCTGTGCGACAGCTGGGCCGACTGCCTGCCGCACGGCGACCGCATCCTGTTGACCCACGGCCCGCTGGCCGAAGGCTTTGTCGGCAGCGACGGCCAGCTGGCGGTCATCACCGAAACCGAGCTGTACGCGATTCCGCCGAAAACCCGGCGCGCGCGAGAGGTCCGCGCGACGCAGATCGACAACCTGCTGCGCGATCTGTCGGAGCTGAAGCCGGGCGACCCGGTGGTGCACGCGCAATACGGCGTCGGCCAGTACCTCGGTCTCGTCAACATGGATCTGGGCGACGGCGACACCGAGTTCTTGCACCTGGAATACGCCAGGGGCGACAAGCTTTACGTGCCGGTGGCCAACCTGCACCTGATTTCGCGCTTCAGCGGCGCCGGCGAAGGCGCGGCGCCCTTGCACAAACTCGGCACCGACCAGTGGGACAAGGCGCGGCGCCGGGCCATGAAGGCGGCACGCGACACCGCGGCCGAACTGCTGAATCTGTACGCGCTGCGCGCGGCGCGCGAGGGCCACGCCTTCCAGTTCTCGCCGCACGACTACGAAGCCTTTGCCGAGGGCTTCGGCTATGAGGAAACGCCCGACCAGGCCGCCGCGATTCTGGCCGTGATGGCCGACATGCAGTCGGGCAAGCCGATGGACCGGCTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCTTTCATGGCGGCGATGGGCGGCTACCAGGTGGCGGTGCTGGTGCCGACTACGCTGCTGGCCGAACAGCATTTCCAGAATTTCTCCGACCGTTTCTCGGCCTGGCCGATCAAGCTCGCCGAGCTTTCACGATTCAGAACCGCCAGGGAGCAGGCCGAAGCGCTCGCCGCGCTCGCGGACGGCAAGCTCGACATCGTCATCGGCACCCACCGGCTGATCCAGAAGGACGTGAAGTTCGCCCGTCTGGGCCTGGTGATCCTGGACGAGGAACACCGCTTTGGCGTGCGCCAGAAAGAACAGTTGAAGGCGATGCGCGCCGAGGTCGACGTGCTGACGCTGACCGCCACGCCGATTCCGCGCACCCTGGCGATGTCGCTCGAAGGCATCCGCGATTTTTCGGTGATTGCGACCGCGCCGCAAAAGCGCCTGTCGGTGAAAACCTTCGTCCAGTCGTTTTCCAGCGGGCTGATCCGCGAGGCGGTGCTGCGCGAACTGAAGCGCGGCGGCCAGGTGTATTTCCTGCACAACGAAGTCAGCACCATCCAGAACATGTTCGAGATGCTGGAAAAACTGCTGCCGGAAGCGCGCATCCGCGTCGGCCACGGGCAGCAGAGCGAGCGCGAACTGGAACAGGTGATGCGCGATTTTTACCAGCAGCGCTACGACGTCCTGCTGTGCACCACCATCATCGAGACCGGCATCGACATCCCCACCGCCAACACCATCCTGATCAACCGCGCCGACAAGTTCGGGCTCGCCCAATTGCACCAATTAAGGGGCCGCGTCGGCCGCTCGCACCACCAGGCCTTTGCCTACCTGCTGGTGGAAGAAGACCGCACCCTGACGCCGCAGGCCAAAAAACGCCTGGAAGCCATTCAATTGCTGGAAGAACTGGGCTCGGGCTTCCATCTCGCCATGCAGGACATGGAAATCCGCGGCGCCGGCGAGGTGCTGGGCGACAAGCAAAGCGGCGAGATTCTCGAAGTCGGCTTTTCGCTCTACAACGACATGCTTGCAGACGCGGTGGCCAGCCTGAAAGCCGGCCATGAGCCGGACATGAACCAGCCATTGGGCGTGGTGTCGGAAATCAACCTGCATCTGCCCGCGCTGCTGCCAGCGGACTATTGCCCCGACGTGCACGAGCGGCTGGTGCTGTACAAGCGGCTGGCCAGCGTACACAGCATGGACGACCTGACCGAATTGCAGGAAGAACTGGTCGACCGCTTCGGCTTGCTGCCCGACCCGGCGCGCGCGCTGATCGACACCCACCGGCTGCGTCTGGTCGCCAAACCGCTGGGCATCATGAAGGTCGACGCCAGCGAAGACAGCATCCTGTTGCAGTTCATCCCGCAGCCGCCGATCGATCCGGGCAGGATCATCCAGCTGATCCAGACCCGACGCGACATCAAGCTGGCAGGTGAAAATCGCCTGCGCCTGAACGTCAGTTCGCCGCCCGAAGCACGGGCAGCCAACGTCATAACATTGTTTAAATTATTTCAGTAA
PROTEIN sequence
Length: 1133
MTFFFPTSLPSGPPRSQSGLAGAADALYLAELARQAGPLVVVCASAWDANRLAEELRWFDSGLRVCNFPDWETLPYDTFSPHPDLISERLATLYQISRGEFDVAVVALSTALYRLAPPAFLAAHTFFLKQKDTLDEAAFRAQMMLGGYTHVNQVFAPGEFSVRGGLIDLFPMGSALPYRIDLFDNEIETLRAFDVDTQRSIYPVGEVRLLPAREFPLDETGITRFRQNFRERFEGDPSKSKLYKDVSNGLAPAGIEYYLPLFFEDTATLFDYLPTTTRLVAHGALDPAGQAFWADAQSRHRLLSGDKDRPLLPPADLFLQTDAFFSLAKAYTRLDIEQAGSGPTHPVPPISVDRREAHPVARLAGFIDSFKGTTLIVAPSAGRRETLHEYLAEHGIRATLCDSWADCLPHGDRILLTHGPLAEGFVGSDGQLAVITETELYAIPPKTRRAREVRATQIDNLLRDLSELKPGDPVVHAQYGVGQYLGLVNMDLGDGDTEFLHLEYARGDKLYVPVANLHLISRFSGAGEGAAPLHKLGTDQWDKARRRAMKAARDTAAELLNLYALRAAREGHAFQFSPHDYEAFAEGFGYEETPDQAAAILAVMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAAMGGYQVAVLVPTTLLAEQHFQNFSDRFSAWPIKLAELSRFRTAREQAEALAALADGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLSVKTFVQSFSSGLIREAVLRELKRGGQVYFLHNEVSTIQNMFEMLEKLLPEARIRVGHGQQSERELEQVMRDFYQQRYDVLLCTTIIETGIDIPTANTILINRADKFGLAQLHQLRGRVGRSHHQAFAYLLVEEDRTLTPQAKKRLEAIQLLEELGSGFHLAMQDMEIRGAGEVLGDKQSGEILEVGFSLYNDMLADAVASLKAGHEPDMNQPLGVVSEINLHLPALLPADYCPDVHERLVLYKRLASVHSMDDLTELQEELVDRFGLLPDPARALIDTHRLRLVAKPLGIMKVDASEDSILLQFIPQPPIDPGRIIQLIQTRRDIKLAGENRLRLNVSSPPEARAANVITLFKLFQ*