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RTP_02272018_0_2um_scaffold_485

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_485_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

171..833
DNA (663bp) protein (221aa)
RNA-directed DNA polymerase n=2 Tax=Escherichia coli RepID=I2YZ35_ECOLX
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
RTP_02272018_0_2um_scaffold_485_2
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(928..1182)
DNA (255bp) protein (85aa)
hypothetical protein id=12493477 bin=THIO_HI species=Acidithiobacillus thiooxidans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Rhodof_02
RTP_02272018_0_2um_scaffold_485_3
Jannaschia sp. CCS1, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1163..1405)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28LR1_JANSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD56351.1}; TaxID=290400 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia sp. (strain CCS1).;"
RTP_02272018_0_2um_scaffold_485_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1575..2432
DNA (858bp) protein (286aa)
pirin n=1 Tax=Thiobacillus thioparus RepID=UPI000379EDB6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97071.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_485_5
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2864..3169
DNA (306bp) protein (102aa)
Addiction module antidote protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X7N4_ACISM
addiction module antidote protein
Addiction module antidote protein {ECO:0000313|EMBL:ADW71468.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
RTP_02272018_0_2um_scaffold_485_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3248..4714
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F8DF
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4711..5433
DNA (723bp) protein (241aa)
Putative lipoprotein id=1348716 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_485_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5542..6453)
DNA (912bp) protein (304aa)
heterodisulfide reductase, B subunit (EC:1.8.98.1)
heterodisulfide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F5F55
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6464..7096)
DNA (633bp) protein (211aa)
heterodisulfide reductase subunit C (EC:1.8.98.1)
Heterodisulfide reductase subunit C {ECO:0000313|EMBL:AAZ97599.1}; EC=1.8.98.1 {ECO:0000313|EMBL:AAZ97599.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
heterodisulfide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D510E
RTP_02272018_0_2um_scaffold_485_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7107..9338)
DNA (2232bp) protein (744aa)
heterodisulfide reductase subunit A (EC:1.8.98.1)
heterodisulfide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000377FC61
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9340..10623)
DNA (1284bp) protein (428aa)
heterodisulfide reductase subunit A (EC:1.8.98.1)
Heterodisulfide reductase, subunit A {ECO:0000313|EMBL:AAZ97601.1}; EC=1.8.98.1 {ECO:0000313|EMBL:AAZ97601.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
heterodisulfide reductase subunit A n=1 Tax=Thiobacillus thioparus RepID=UPI000360B4C4
RTP_02272018_0_2um_scaffold_485_12
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10838..12154)
DNA (1317bp) protein (439aa)
Sodium/hydrogen exchanger n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ30_9PROT
sodium/hydrogen exchanger
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
RTP_02272018_0_2um_scaffold_485_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12328..12882)
DNA (555bp) protein (185aa)
metallophosphoesterase n=1 Tax=Thiobacillus thioparus RepID=UPI00036C0923
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12988..13536)
DNA (549bp) protein (183aa)
inorganic pyrophosphatase (EC:3.6.1.1)
inorganic pyrophosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00037BBAA6
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13622..17020
DNA (3399bp) protein (1133aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
transcription-repair coupling factor n=1 Tax=Thiobacillus thioparus RepID=UPI00036D1DB7
transcription-repair coupling factor
RTP_02272018_0_2um_scaffold_485_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17041..17880
DNA (840bp) protein (280aa)
phosphoserine phosphatase SerB (EC:3.1.3.3)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036390DC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17958..18236
DNA (279bp) protein (93aa)
anti-sigma-28 factor FlgM; K02398 negative regulator of flagellin synthesis FlgM id=12493503 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
anti-sigma-28 factor FlgM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18272..18481
DNA (210bp) protein (70aa)
copper ion binding protein; K07213 copper chaperone id=12493502 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
copper ion binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18496..20601)
DNA (2106bp) protein (702aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003743F6F
diguanylate cyclase/phosphodiesterase
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) {ECO:0000313|EMBL:AAZ97613.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_485_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20601..21593)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DFBC6
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21545..22270)
DNA (726bp) protein (242aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Thiobacillus thioparus RepID=UPI00035EA905
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22272..22718)
DNA (447bp) protein (149aa)
ribonuclease HI (EC:3.1.26.4)
Ribonuclease H {ECO:0000255|HAMAP-Rule:MF_00042}; Short=RNase H {ECO:0000255|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00042};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNaseH ribonuclease n=1 Tax=Thiobacillus thioparus RepID=UPI00036361A5
RTP_02272018_0_2um_scaffold_485_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22708..23445)
DNA (738bp) protein (246aa)
methyltransferase type 11 n=1 Tax=Thiobacillus thioparus RepID=UPI000369C54A
methyl-transferase
Methyl-transferase {ECO:0000313|EMBL:AAZ97617.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_485_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23475..24245
DNA (771bp) protein (257aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] id=12493496 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24302..25876
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D6E57
peptidoglycan-binding protein LysM
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_485_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25886..26149)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C5363
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_485_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26106..28082)
DNA (1977bp) protein (659aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003745A12
oligopeptide ABC transporter ATP-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28079..29500)
DNA (1422bp) protein (474aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000364E051
oligopeptide ABC transporter permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_485_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29497..30474)
DNA (978bp) protein (326aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000377B46D
oligopeptide ABC transporter permease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_485_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30474..32684)
DNA (2211bp) protein (737aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C18C8
Oligopeptide ABC transporter periplasmic component {ECO:0000313|EMBL:AAZ97624.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
oligopeptide ABC transporter periplasmic protein
Displaying items 1-30 of 36 in total

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