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RTP_03222018_0_1um_scaffold_237

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_237_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1000
DNA (999bp) protein (333aa)
arsenic transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037A6957
ACR3 family arsenite transporter
Putative arsenite transporter, ACR3 family {ECO:0000313|EMBL:AAZ97379.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_237_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1236..5168
DNA (3933bp) protein (1311aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FD01B
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_237_trna_5
unknown

Not on your lists

comp(5227..5297)
DNA (71bp)
transferRNA Thr
RTP_03222018_0_1um_scaffold_237_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5487..6875)
DNA (1389bp) protein (463aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=12494300 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_237_trna_1
unknown

Not on your lists

6985..7056
DNA (72bp)
transferRNA Val
RTP_03222018_0_1um_scaffold_237_4
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7137..7601)
DNA (465bp) protein (155aa)
DoxX family protein; K15977 putative oxidoreductase id=12497338 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DoxX family protein
Tax=CG_Hydro_01
RTP_03222018_0_1um_scaffold_237_5
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7678..8007)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Pseudomonas mendocina RepID=J7TKA5_PSEME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP84317.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
RTP_03222018_0_1um_scaffold_237_6
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8135..8380)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Neisseria shayeganii 871 RepID=G4CIX7_9NEIS
putative uncharacterized protein
Tax=CG_Hydro_01
RTP_03222018_0_1um_scaffold_237_7
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8620..9021)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Marinobacter lipolyticus RepID=UPI00036C1E69
Uncharacterized protein {ECO:0000313|EMBL:EAZ97809.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
ybeQ; hypothetical protein
RTP_03222018_0_1um_scaffold_237_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(9194..10960)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z1E4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
RTP_03222018_0_1um_scaffold_237_9
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11055..11312)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F4L7_SORC5
Cell division protein BolA {ECO:0000313|EMBL:EYF06454.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_237_10
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11519..12160)
DNA (642bp) protein (214aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Massilia niastensis RepID=UPI0003706FB1
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_1um_scaffold_237_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12256..12816)
DNA (561bp) protein (187aa)
Nitrogen-fixing NifU-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB63_NITMU
Nitrogen fixation protein NifU {ECO:0000313|EMBL:KIO50197.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
nitrogen-fixing NifU-like
RTP_03222018_0_1um_scaffold_237_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12827..13312)
DNA (486bp) protein (162aa)
NifU-like protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AHH5_9PROT
SUF system FeS assembly protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
RTP_03222018_0_1um_scaffold_237_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13312..14568)
DNA (1257bp) protein (419aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Cysteine desulfurase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEW9_9PROT
SufS subfamily cysteine desulfurase
RTP_03222018_0_1um_scaffold_237_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14565..15905)
DNA (1341bp) protein (447aa)
Iron-sulfur cluster assembly protein SufD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFJ5_9PROT
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:KIO50500.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FeS assembly protein SufD
RTP_03222018_0_1um_scaffold_237_15
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15902..16699)
DNA (798bp) protein (266aa)
Putative ATP-dependent transporter SufC n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YJM7_9PROT
Putative ATP-dependent transporter SufC {ECO:0000313|EMBL:ESS15073.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
FeS assembly ATPase SufC
RTP_03222018_0_1um_scaffold_237_16
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16696..18132)
DNA (1437bp) protein (479aa)
FeS cluster assembly protein SufB n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4Y3A7_9PROT
FeS cluster assembly protein SufB {ECO:0000313|EMBL:ESS15074.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
cysteine desulfurase activator complex subunit SufB
RTP_03222018_0_1um_scaffold_237_17
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18188..18538)
DNA (351bp) protein (117aa)
Iron-sulfur cluster assembly protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YPD6_9PROT
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:ESS15076.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
HesB/YadR/YfhF
RTP_03222018_0_1um_scaffold_237_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19165..20565
DNA (1401bp) protein (467aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D14C6
DEAD/DEAH box helicase
RTP_03222018_0_1um_scaffold_237_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20656..22161
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ED88C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_237_20
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22279..22998)
DNA (720bp) protein (240aa)
RES domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLY6_9GAMM
RES domain-containing protein
Tax=CG_Mariprof_01
RTP_03222018_0_1um_scaffold_237_21
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22998..23393)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLY7_9GAMM
hypothetical protein
Tax=CG_Mariprof_01
RTP_03222018_0_1um_scaffold_237_22
unknown

Not on your lists

24778..25071
DNA (294bp) protein (98aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_237_23
unknown

Not on your lists

25250..25513
DNA (264bp) protein (88aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_237_24
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25989..27305)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000363201F
Protein HipA {ECO:0000313|EMBL:EBA00022.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_237_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27302..27613)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F5FDB
Transcriptional regulator {ECO:0000313|EMBL:KGH10263.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
transcriptional regulator
RTP_03222018_0_1um_scaffold_237_26
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27920..28564)
DNA (645bp) protein (215aa)
Glutathione S-transferase domain n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SD92_GALCS
glutathione S-transferase
Glutathione S-transferase domain {ECO:0000313|EMBL:ADL56690.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_03222018_0_1um_scaffold_237_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28696..29772
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003633B6B
thioredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_237_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29848..31242)
DNA (1395bp) protein (465aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FC468
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 178 in total

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