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RTP_03222018_0_1um_scaffold_250

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_250_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(186..620)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365B5B0
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_250_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(613..1245)
DNA (633bp) protein (211aa)
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18)
endonuclease IV n=1 Tax=Thiobacillus thioparus RepID=UPI00035F9333
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1261..1938)
DNA (678bp) protein (226aa)
electron transporter RsxE n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DCE4D
electron transport complex RsxE subunit
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1963..2607)
DNA (645bp) protein (215aa)
electron transporter RnfG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FA946
RnfABCDGE type electron transport complex subunit G
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2604..3641)
DNA (1038bp) protein (346aa)
electron transporter RnfG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037556D7
RnfABCDGE type electron transport complex subunit D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3641..5311)
DNA (1671bp) protein (557aa)
electron transporter RnfC n=1 Tax=Thiobacillus denitrificans RepID=UPI00036006DA
electron transport complex protein RnfC
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5308..5859)
DNA (552bp) protein (184aa)
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB id=12496785 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
electron transport complex protein RnfB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5859..6434)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHB8_THIDA
RnfABCDGE type electron transport complex subunit A
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_9
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6886..7908
DNA (1023bp) protein (341aa)
Multicopper oxidase type 3 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQK6_THISH
multicopper oxidase type 3
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44613.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_03222018_0_1um_scaffold_250_10
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7927..8652
DNA (726bp) protein (242aa)
Multicopper oxidase type 3 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQK7_THISH
multicopper oxidase type 3
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44612.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_03222018_0_1um_scaffold_250_11
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8655..8852
DNA (198bp) protein (66aa)
multicopper oxidase type 3
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44612.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
RTP_03222018_0_1um_scaffold_250_12
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8949..10319
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D89A1
heavy metal efflux system protein
Tax=RBG_16_Gallionellales_56_9_curated
RTP_03222018_0_1um_scaffold_250_13
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10331..13444
DNA (3114bp) protein (1038aa)
cusA; RND family outer membrane copper/silver/drug transport protein id=12493239 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cusA; RND family outer membrane copper/silver/drug transport protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_250_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13485..14465)
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHC0_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97966.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14682..16295)
DNA (1614bp) protein (538aa)
Putative esterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHC1_THIDA
esterase
Putative esterase {ECO:0000313|EMBL:AAZ97965.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16324..16764)
DNA (441bp) protein (147aa)
Putative esterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHC1_THIDA
esterase
Putative esterase {ECO:0000313|EMBL:AAZ97965.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_17
unknown

Not on your lists

comp(16857..16988)
DNA (132bp) protein (44aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_250_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17140..17808)
DNA (669bp) protein (223aa)
phosphoserine phosphatase (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003663FAA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17846..18514)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003683F2A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97963.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_250_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18665..22567
DNA (3903bp) protein (1301aa)
ATP-dependent helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00036799EC
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AAZ97961.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ATP-dependent helicase HrpA
RTP_03222018_0_1um_scaffold_250_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22581..23156
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036018F7
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23143..24360)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CDB1B
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_250_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24414..24962)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A8495
peroxiredoxin-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_24
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25195..26181
DNA (987bp) protein (329aa)
Integrase family protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K7N5_NITWC
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADJ28912.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
RTP_03222018_0_1um_scaffold_250_25
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26551..27963
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI0003726F67
hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_03222018_0_1um_scaffold_250_26

Not on your lists

comp(28137..28439)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=I6YQ09_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AFN66378.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RTP_03222018_0_1um_scaffold_250_27

Not on your lists

comp(28436..29377)
DNA (942bp) protein (314aa)
Putative integrase n=1 Tax=uncultured bacterium RepID=I6ZME9_9BACT
Putative integrase {ECO:0000313|EMBL:AFN66379.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_250_28
unknown

Not on your lists

comp(30164..30457)
DNA (294bp) protein (98aa)
hypothetical protein id=12498594 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RTP_03222018_0_1um_scaffold_250_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30534..30818)
DNA (285bp) protein (95aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003671370
histone family protein DNA-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_250_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31553..32410
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372D903
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96853.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 52 in total

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