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RTP_03222018_0_1um_scaffold_484

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_484_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..321
DNA (321bp) protein (107aa)
Putative tetrathionate reductase, subunit A n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI39_THIDA
tetrathionate reductase subunit A
Putative tetrathionate reductase, subunit A {ECO:0000313|EMBL:AAZ97694.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

370..801
DNA (432bp) protein (144aa)
ATP synthase epsilon chain 1 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=ATPE1_THIDA
H+-transporting two-sector ATPase, delta/subunit epsilon
ATP synthase epsilon chain 1 {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit 1 {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit 1 {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_3
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1004..1471)
DNA (468bp) protein (156aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB68942.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
RTP_03222018_0_1um_scaffold_484_4
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1521..2009
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00036A6200
Transposase {ECO:0000313|EMBL:KIF61579.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
transposase family protein
RTP_03222018_0_1um_scaffold_484_5
unknown

Not on your lists

2339..2608
DNA (270bp) protein (90aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_484_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2803..3432)
DNA (630bp) protein (210aa)
Two Component Transcriptional Regulator, LuxR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI37_THIDA
LuxR family transcriptional regulator
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ97696.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3416..5116)
DNA (1701bp) protein (567aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI36_THIDA
RTP_03222018_0_1um_scaffold_484_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5542..7371)
DNA (1830bp) protein (610aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
glucosamine--fructose-6-phosphate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000375E39B
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7374..8750)
DNA (1377bp) protein (459aa)
glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase (EC:2.3.1.157 2.7.7.23)
glucosamine-1-phosphate N-acetyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614CFE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8994..9410)
DNA (417bp) protein (139aa)
atpC; ATP synthase F0F1 subunit epsilon (EC:3.6.3.14)
ATP synthase epsilon chain 2 id=1324848 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_484_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9515..10894)
DNA (1380bp) protein (460aa)
ATP synthase F0F1 subunit beta (EC:3.6.3.14)
F0F1 ATP synthase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI00037AAA11
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10952..11824)
DNA (873bp) protein (291aa)
ATP synthase F0F1 subunit gamma (EC:3.6.3.14)
F0F1 ATP synthase subunit gamma n=1 Tax=Thiobacillus thioparus RepID=UPI0003781A2F
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_484_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11869..13410)
DNA (1542bp) protein (514aa)
ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
F0F1 ATP synthase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5B74
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13484..14020)
DNA (537bp) protein (179aa)
F-type H+-transporting ATP synthase, delta (OSCP) subunit (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Thiobacillus thioparus RepID=UPI000371DC6F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_484_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14024..14494)
DNA (471bp) protein (157aa)
F-type H+-transporting ATP synthase subunit B (EC:3.6.3.14); K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] id=12494014 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
F-type H+-transporting ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000255|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; Short=F-ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14562..14801)
DNA (240bp) protein (80aa)
ATP synthase F0F1 subunit C (EC:3.6.3.14)
F0F1 ATP synthase subunit C n=1 Tax=Thiobacillus thioparus RepID=UPI00037A41A1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14868..15734)
DNA (867bp) protein (289aa)
ATP synthase F0F1 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=ATP6_THIDA
ATP synthase subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; ATP synthase F0 sector subunit a {ECO:0000255|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000255|HAMAP-Rule:MF_01393}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15829..16200)
DNA (372bp) protein (124aa)
Putative uncharacterized protein id=1324840 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16323..17174)
DNA (852bp) protein (284aa)
chromosome partitioning protein ParB n=1 Tax=Thiobacillus thioparus RepID=UPI00035CF4DE
chromosome segregation DNA-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_484_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17174..17956)
DNA (783bp) protein (261aa)
cobyric acid synthase CobQ n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CA080
chromosome segregation ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17953..18579)
DNA (627bp) protein (209aa)
Ribosomal RNA small subunit methyltransferase G id=1324837 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
gidB; 16S rRNA methyltransferase GidB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18576..20483)
DNA (1908bp) protein (636aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381BD5C
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
RTP_03222018_0_1um_scaffold_484_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20577..22478)
DNA (1902bp) protein (634aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EDE47
ABC transporter ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22513..23223)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365B919
LamB/YcsF family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_484_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23220..24881)
DNA (1662bp) protein (554aa)
allophanate hydrolase subunit 2 (EC:3.5.1.54)
Allophanate hydrolase subunit 2 {ECO:0000313|EMBL:AAZ98765.1}; EC=3.5.1.54 {ECO:0000313|EMBL:AAZ98765.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BF6DD
RTP_03222018_0_1um_scaffold_484_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25115..26797)
DNA (1683bp) protein (561aa)
RNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI000369E785
DEAD/DEAH box helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:AAZ98768.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_484_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26772..28565)
DNA (1794bp) protein (598aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361EF1F
ABC transporter ATPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_484_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28572..29912)
DNA (1341bp) protein (447aa)
tRNA modification GTPase MnmE id=1307773 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
tRNA modification GTPase TrmE
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_484_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30520..31326
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AEC24
phosphonate ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
RTP_03222018_0_1um_scaffold_484_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31329..32195
DNA (867bp) protein (289aa)
phosphate ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003623A03
phosphonate ABC transporter periplasmic phosphonate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying items 1-30 of 51 in total

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