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RTP_03222018_0_1um_scaffold_499

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_499_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..710
DNA (708bp) protein (236aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DF459
DMSO reductase subunit B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..1793
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370F72C
DMSO reductase subunit C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_499_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1900..2229
DNA (330bp) protein (110aa)
rhodanese-like protein id=12497718 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2359..2586
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL89_THIDA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2676..3185
DNA (510bp) protein (170aa)
NADH dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CBDE8
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3413..4687
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037DFEF4
long-chain fatty acid transport protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5070..7724)
DNA (2655bp) protein (885aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=12497986 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Tax=CG_Hydro_01
RTP_03222018_0_1um_scaffold_499_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7841..8365)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036508BC
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8376..8804)
DNA (429bp) protein (143aa)
DNA polymerase III subunit chi (EC:2.7.7.7)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B0C38
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8801..10315)
DNA (1515bp) protein (505aa)
leucyl aminopeptidase (EC:3.4.11.1)
multifunctional aminopeptidase A n=1 Tax=Thiobacillus thioparus RepID=UPI000370ADF5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10424..11416
DNA (993bp) protein (331aa)
hypothetical protein; K07091 lipopolysaccharide export system permease protein id=12493883 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96534.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_499_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11413..12486
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000364B141
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96535.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_499_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12552..13277
DNA (726bp) protein (242aa)
anaerobic ribonucleoside triphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003747F3C
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_499_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13281..13751)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C3A5A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_499_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13748..14866)
DNA (1119bp) protein (373aa)
cupin n=1 Tax=Thiobacillus thioparus RepID=UPI000366EC5F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_499_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14941..15420
DNA (480bp) protein (160aa)
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A1C65
alkyl hydroperoxide reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15417..15899
DNA (483bp) protein (161aa)
peptidylprolyl isomerase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B3FE9
FKBP-type peptidylprolyl isomerase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15992..16960
DNA (969bp) protein (323aa)
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha id=1357658 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16968..18317
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037898AB
cell cycle protein MesJ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_20
unknown

Not on your lists

18528..18959
DNA (432bp) protein (144aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_499_21
unknown

Not on your lists

18967..19116
DNA (150bp) protein (50aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_499_22
unknown

Not on your lists

comp(19170..19310)
DNA (141bp) protein (47aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_499_23
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19372..20610
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EC436
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_03222018_0_1um_scaffold_499_24
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

21074..23677
DNA (2604bp) protein (868aa)
diguanylate cyclase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645F40
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EES53865.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
RTP_03222018_0_1um_scaffold_499_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24026..24454
DNA (429bp) protein (143aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B9AD2
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24465..25583
DNA (1119bp) protein (373aa)
50S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D5F95
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_499_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25580..26356
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7605
TPR repeat-containing pilus assembly protein PilF
Putative pilus assembly protein PilF, TPR repeat {ECO:0000313|EMBL:AAZ96545.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_499_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26353..27162
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E52B8
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_499_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27162..28382
DNA (1221bp) protein (407aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00038079C3
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_499_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28406..29671
DNA (1266bp) protein (422aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase id=1373441 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 43 in total

View Taxonomy