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RTP_03222018_0_1um_scaffold_527

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Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_527_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..765
DNA (765bp) protein (255aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
pyrroline-5-carboxylate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003684BA5
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

762..1337
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003713192
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1697..3358
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003691300
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3390..5114)
DNA (1725bp) protein (575aa)
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003817111
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5111..5380)
DNA (270bp) protein (90aa)
phosphocarrier protein HPr n=1 Tax=Thiobacillus denitrificans RepID=UPI0003760CFB
HPrNtr
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5361..5777)
DNA (417bp) protein (139aa)
PTS fructose transporter subunit IIA n=1 Tax=Thiobacillus thioparus RepID=UPI000362A3DF
pentitol phosphotransferase enzyme IIA component
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5890..6906)
DNA (1017bp) protein (339aa)
putative thaimine biosynthesis protein; K03734 thiamine biosynthesis lipoprotein id=12493748 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
thaimine biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6903..7856)
DNA (954bp) protein (318aa)
glutathione synthase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3] id=12493749 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glutathione synthase (EC:6.3.2.3)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7853..9133)
DNA (1281bp) protein (427aa)
Glutamate--cysteine ligase GshA id=1328427 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glutamate--cysteine ligase GshA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9137..9640
DNA (504bp) protein (168aa)
tRNA (cytidine(34)-2'-O)-methyltransferase id=1328426 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RNA methyltransferase CspR
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9655..10134
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003788902
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_12
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10421..12898)
DNA (2478bp) protein (826aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G427_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT09029.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_527_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13321..14322)
DNA (1002bp) protein (334aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=1328422 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14319..14759)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371DB6B
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14782..15237)
DNA (456bp) protein (152aa)
preprotein translocase subunit SecB n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CEAD1
preprotein translocase subunit SecB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15302..15730)
DNA (429bp) protein (143aa)
Thioredoxin id=1328419 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15829..16089)
DNA (261bp) protein (87aa)
glutaredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F6436
glutaredoxin, GrxC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16109..16522)
DNA (414bp) protein (138aa)
Rhodanese-like protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG98_THIDA
rhodanese-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16535..16753)
DNA (219bp) protein (73aa)
Putative uncharacterized protein id=1328415 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16750..18876)
DNA (2127bp) protein (709aa)
multidrug transporter AcrB n=1 Tax=Thiobacillus thioparus RepID=UPI0003762541
acriflavin resistance protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18906..19874)
DNA (969bp) protein (323aa)
multidrug transporter AcrB n=1 Tax=Thiobacillus thioparus RepID=UPI0003762541
acriflavin resistance protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19887..20930)
DNA (1044bp) protein (348aa)
Secretion protein HlyD id=1328413 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secretion protein HlyD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21155..21478)
DNA (324bp) protein (108aa)
Putative Transcriptional Regulator, ArsR family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SGA2_THIDA
ArsR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21652..23193
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=1328411 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23200..24468
DNA (1269bp) protein (423aa)
Peptidase family M23 protein id=1328410 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
M23 family peptidase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24472..25887
DNA (1416bp) protein (472aa)
peptidase S41A, protease (EC:3.4.21.102)
peptidase S41 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD57E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_527_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25967..26362
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037CA894
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26378..27154
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000373617C
adenylyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_527_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27142..27726)
DNA (585bp) protein (195aa)
Possible Transcriptional Regulator, TetR family id=1320208 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
slmA; nucleoid occlusion protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_527_30
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27874..30207)
DNA (2334bp) protein (778aa)
Type I site-specific deoxyribonuclease n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYE6_HALNC
Putative Restriction endonuclease {ECO:0000313|EMBL:CDH43614.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
restriction endonuclease subunit R
Displaying items 1-30 of 129 in total

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