ggKbase home page

RTP_03222018_0_1um_scaffold_568

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_568_1
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245..520)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI00035CE40C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
RTP_03222018_0_1um_scaffold_568_2
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(513..740)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI000382588C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
RTP_03222018_0_1um_scaffold_568_3
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1658..2020
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=uncultured prokaryote RepID=M1GMD0_9ZZZZ
transcriptional regulator
Tax=GWA2_Gallionellales_54_124_curated
RTP_03222018_0_1um_scaffold_568_4
unknown

Not on your lists

comp(2121..2447)
DNA (327bp) protein (109aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_568_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2574..3896
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00037F27A4
putative polysaccharide biosynthesis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

4052..5050
DNA (999bp) protein (333aa)
Putative dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol, alpha-3-L-rhamnosyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z9D1_9BACT id=5223750 bin=16ft_combo_ws3_JS1 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl transferase family protein
Glycosyl transferase family protein {ECO:0000313|EMBL:AIE86957.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
RTP_03222018_0_1um_scaffold_568_7

Not on your lists

5038..6087
DNA (1050bp) protein (350aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM94506.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ubiquinone/menaquinone biosynthesis methyltransferase id=718432 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
type 11 methyltransferase
RTP_03222018_0_1um_scaffold_568_8
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6068..7033
DNA (966bp) protein (322aa)
Glycosyl transferase, family 2 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6C8_GEOUR
Low-salt glycan biosynthesis hexosyltransferase Agl10 {ECO:0000313|EMBL:GAM08239.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
glycosyl transferase family protein
RTP_03222018_0_1um_scaffold_568_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7161..8294
DNA (1134bp) protein (378aa)
group 1 glycosyl transferase id=1345540 bin=GWE1_T_denit_62_9 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative Glycosyl transferase group 1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8308..9264
DNA (957bp) protein (319aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KCV0_CYAP7
NAD-dependent epimerase/dehydratase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9315..10043
DNA (729bp) protein (243aa)
Methyltransferase FkbM family id=1345543 bin=GWE1_T_denit_62_9 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Methyltransferase FkbM family
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10040..10846
DNA (807bp) protein (269aa)
Glycosyltransferases involved in cell wall biogenesis-like protein id=1345544 bin=GWE1_T_denit_62_9 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Glycosyltransferases involved in cell wall biogenesis-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10843..11592
DNA (750bp) protein (250aa)
Putative uncharacterized protein id=1345545 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_568_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11589..12536
DNA (948bp) protein (316aa)
Putative UDP-glucose 4-epimerase id=1345546 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
UDP-glucose 4-epimerase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_15
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12675..12989
DNA (315bp) protein (105aa)
Putative antitoxin, Prevent-host-death family protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P630_AROAE
antitoxin, prevent-host-death family protein
Putative antitoxin, Prevent-host-death family protein {ECO:0000313|EMBL:CAI07231.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_03222018_0_1um_scaffold_568_16
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13609..13941
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PTV6_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
RTP_03222018_0_1um_scaffold_568_17
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13938..14312
DNA (375bp) protein (125aa)
Transcriptional regulator, ArsR family n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SVP8_POLSQ
Transcriptional regulator {ECO:0000313|EMBL:GAO37554.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_03222018_0_1um_scaffold_568_18
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14683..15729
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B53AEC
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_03222018_0_1um_scaffold_568_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15942..16922
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003699106
undecaprenyl phosphate N-acetylglucosaminyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16912..18525
DNA (1614bp) protein (538aa)
Putative epimerase/dehydratase polysaccharide-related biosynthesis protein id=1345548 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
epimerase/dehydratase-like biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_568_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18675..19940)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein id=1345549 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_568_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20093..21151)
DNA (1059bp) protein (353aa)
glycosyltransferase (EC:2.4.1.-)
Glycosyl transferase, group 1 id=1345550 bin=GWE1_T_denit_62_9 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_568_23
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21305..22120
DNA (816bp) protein (272aa)
hypothetical protein id=12497904 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71574.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
RTP_03222018_0_1um_scaffold_568_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22107..23171
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHR4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97822.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_568_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23270..24400)
DNA (1131bp) protein (377aa)
glycosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D7C94
glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24379..25305)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BB5B5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25507..26589)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367EA8B
D-amino acid oxidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26701..27222
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003781618
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_568_29
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27401..27916
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367D6D2
fimbrial pilin related signal peptide protein
Tax=CG_Hydro_01
RTP_03222018_0_1um_scaffold_568_30
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27925..28368
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370DFFE
Tfp pilus assembly protein PilV
Tax=CG_Hydro_01
Displaying items 1-30 of 73 in total

View Taxonomy