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RTP_03222018_0_1um_scaffold_598

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_598_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(267..1061)
DNA (795bp) protein (265aa)
flagellar biosynthesis protein FliR n=1 Tax=Thiobacillus denitrificans RepID=UPI00037294F7
flagellar biosynthesis protein FliR
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1183..1452)
DNA (270bp) protein (90aa)
Flagellar biosynthesis protein FliQ id=1317103 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthesis protein FliQ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1792..2553)
DNA (762bp) protein (254aa)
Flagellar transport protein FliP id=1317102 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fliP; flagellar biosynthesis protein FliP
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2543..2968)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036514BA
flagellar biogenesis protein FliO
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2965..3369)
DNA (405bp) protein (135aa)
Flagellar motor switch/type III secretory pathway protein FliN n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIG7_THIDA
flagellar motor switch/type III secretory pathway protein FliN
Flagellar motor switch/type III secretory pathway protein FliN {ECO:0000313|EMBL:AAZ97561.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_598_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3362..4366)
DNA (1005bp) protein (335aa)
flagellar motor switch protein FliM n=1 Tax=Thiobacillus thioparus RepID=UPI0003720113
fliM; flagellar motor switch protein FliM
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4373..4849)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037BC13B
fliL; flagellar basal body protein FliL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_598_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4980..6077)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379ABF3
flagellar hook-length control protein FliK
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6092..6541)
DNA (450bp) protein (150aa)
Flagellar protein FliJ id=1317096 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar protein FliJ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6569..7969)
DNA (1401bp) protein (467aa)
flagellar biosynthesis/type III secretory pathway ATPase FliI (EC:3.6.3.14)
ATP synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C12F3
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7969..8622)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037491CF
flagellar assembly protein FliH
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8615..9616)
DNA (1002bp) protein (334aa)
flagellar motor switch protein FliG n=1 Tax=Thiobacillus denitrificans RepID=UPI00038060D7
flagellar motor switch protein FliG
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9609..11246)
DNA (1638bp) protein (546aa)
flagellar M-ring protein FliF n=1 Tax=Thiobacillus denitrificans RepID=UPI000373C5CD
fliF; flagellar MS-ring protein
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_598_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11454..11798
DNA (345bp) protein (115aa)
Flagellar hook-basal body complex protein FliE id=1317091 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fliE; flagellar hook-basal body protein FliE
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12103..13059)
DNA (957bp) protein (319aa)
chemotaxis protein CheV n=1 Tax=Thiobacillus thioparus RepID=UPI0003606C1F
chemotaxis protein CheW
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13106..13873)
DNA (768bp) protein (256aa)
hypothetical protein id=12495009 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13877..14170)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378A60A
flagellar protein FhlB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14157..15164)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380F5AD
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15177..15506)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C9D5B
flagellar protein FliT
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15520..15954)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037AEAD6
flagellar protein FliS
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15969..17966)
DNA (1998bp) protein (666aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000376E53B
Flagellar hook protein FliD {ECO:0000313|EMBL:KIO48055.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flagellar hook-associated 2-like
RTP_03222018_0_1um_scaffold_598_22
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17977..18342)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FEBAA
flaG; flagellin protein
Flagellin protein {ECO:0000313|EMBL:ADJ63569.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
RTP_03222018_0_1um_scaffold_598_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18466..19650)
DNA (1185bp) protein (395aa)
Flagellin-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9D1_NITMU
flagellin-like
Flagellin-like protein {ECO:0000313|EMBL:ABB74640.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RTP_03222018_0_1um_scaffold_598_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20117..21706)
DNA (1590bp) protein (530aa)
diguanylate cyclase id=12498707 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_25
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22273..22725
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI00036B5DC8
hypothetical protein
Tax=GWA2_Gallionellales_60_18_curated
RTP_03222018_0_1um_scaffold_598_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22902..23549)
DNA (648bp) protein (216aa)
Two Component Transcriptional Regulator, LuxR family id=1377515 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
LuxR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_598_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23598..25055)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003729008
sensor protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_598_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25246..26514
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377B80A
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_598_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26511..27206
DNA (696bp) protein (232aa)
pyruvate formate lyase-activating protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A35D7
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_598_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27145..27450
DNA (306bp) protein (102aa)
pyruvate formate lyase-activating protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A35D7
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 40 in total

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