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RTP_03222018_0_1um_scaffold_740

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_740_1
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(263..1453)
DNA (1191bp) protein (397aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0C1_9PROT
RTP_03222018_0_1um_scaffold_740_2
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1614..2933
DNA (1320bp) protein (440aa)
Membrane protein related to metalloendopeptidases n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0C2_9PROT
Membrane protein related to metalloendopeptidases {ECO:0000313|EMBL:CAI78478.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
peptidase
RTP_03222018_0_1um_scaffold_740_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2975..4048
DNA (1074bp) protein (358aa)
Anhydro-N-acetylmuramic acid kinase id=1351107 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
anmK; anhydro-N-acetylmuramic acid kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_4
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4140..4490)
DNA (351bp) protein (117aa)
iron--sulfur cluster insertion protein ErpA n=1 Tax=Thiobacillus thioparus RepID=UPI00036830C6
Putative iron-sulfur cluster insertion protein ErpA {ECO:0000256|HAMAP-Rule:MF_01380}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
HesB-like protein
RTP_03222018_0_1um_scaffold_740_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4585..5613)
DNA (1029bp) protein (343aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase id=1351105 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5731..6123)
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 id=1351104 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6139..6573)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Thiobacillus denitrificans RepID=UPI000373A138
rplM; 50S ribosomal protein L13
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_740_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6642..7403
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360933A
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_740_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7413..7829
DNA (417bp) protein (139aa)
OsmC/Ohr family protein id=1360777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
OsmC/Ohr family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_10
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8016..8630)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. P2S70 RepID=U7FSU5_9GAMM
transposase
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_740_11
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8663..8854)
DNA (192bp) protein (64aa)
Transposase Y1 Tnp domain-containing protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EN50_9GAMM
conserved hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_03222018_0_1um_scaffold_740_12
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8965..9318)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NEK7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX88589.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
RTP_03222018_0_1um_scaffold_740_13
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9315..9545)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AR03_CHLCH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_03222018_0_1um_scaffold_740_14
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9705..10043)
DNA (339bp) protein (113aa)
HicB family protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DVL1_THIND
Uncharacterized protein {ECO:0000313|EMBL:EXI84634.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
HicB family protein
RTP_03222018_0_1um_scaffold_740_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10040..10288)
DNA (249bp) protein (83aa)
toxin HicA n=1 Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI00035F230B
HicA family toxin-antitoxin system, toxin component
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
RTP_03222018_0_1um_scaffold_740_16
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10567..11796)
DNA (1230bp) protein (410aa)
Outer membrane protein (Porin) n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAX3_9PROT
outer membrane protein (porin)
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_1um_scaffold_740_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11988..13244)
DNA (1257bp) protein (419aa)
outer membrane protein (porin) id=12494216 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
outer membrane protein (porin)
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_1um_scaffold_740_18
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13443..13853)
DNA (411bp) protein (137aa)
Toxin-antitoxin system, toxin component, PIN family n=1 Tax=delta proteobacterium NaphS2 RepID=D8F710_9DELT
PilT protein domain-containing protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_1um_scaffold_740_19
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13850..14086)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000381819E
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_03222018_0_1um_scaffold_740_20
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14387..14704)
DNA (318bp) protein (106aa)
Plasmid stabilization system n=1 Tax=Pectobacterium wasabiae (strain WPP163) RepID=D0KID9_PECWW
plasmid stabilization system
Tax=CG_Syntroph_02
RTP_03222018_0_1um_scaffold_740_21
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14694..14930)
DNA (237bp) protein (79aa)
Predicted regulator of plasmid copy number n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NY16_AROAE
regulator of plasmid copy number
Tax=CG_Beta_01
RTP_03222018_0_1um_scaffold_740_22
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15350..15649)
DNA (300bp) protein (100aa)
hypothetical protein n=2 Tax=Thioalkalivibrio RepID=UPI00037D5CF6
DNA polymerase III subunit beta
DNA polymerase III subunit beta {ECO:0000313|EMBL:AHK78203.1}; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="Halorhodospira halochloris str. A.;"
RTP_03222018_0_1um_scaffold_740_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15692..16879)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374C430
phospholipase D/transphosphatidylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16879..17631)
DNA (753bp) protein (251aa)
endonuclease/exonuclease/phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000372674B
endonuclease / exonuclease / phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_740_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17639..18079)
DNA (441bp) protein (147aa)
NUDIX hydrolase id=1360783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ntpA; dATP pyrophosphohydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18076..18381)
DNA (306bp) protein (102aa)
RNA polymerase subunit sigma-32 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665A40
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_740_27

Not on your lists


comp(18460..20250)
DNA (1791bp) protein (597aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFK95333.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFK95333.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DAC15
RTP_03222018_0_1um_scaffold_740_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20287..20880)
DNA (594bp) protein (198aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003751B52
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_740_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20956..21177)
DNA (222bp) protein (74aa)
FmdB family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000380C8AB
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_740_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21511..23559)
DNA (2049bp) protein (683aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377DAC5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 34 in total

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