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RTP_03222018_0_1um_scaffold_1518

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_1518_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..104)
DNA (102bp) protein (34aa)
cbbT; transketolase (EC:2.2.1.1)
transketolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037A1B37
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1518_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(339..1121)
DNA (783bp) protein (261aa)
myo-inositol-1(or 4)-monophosphatase (EC:3.1.3.25)
Myo-inositol-1(Or 4)-monophosphatase id=1327197 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1124..1738)
DNA (615bp) protein (205aa)
NodS-like protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367808E
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1740..2297)
DNA (558bp) protein (186aa)
alkyl hydroperoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB549
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2342..3070
DNA (729bp) protein (243aa)
Ribosomal RNA small subunit methyltransferase E id=1327200 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
16S ribosomal RNA methyltransferase RsmE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1518_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3128..3565)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379A5FF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3879..5207
DNA (1329bp) protein (443aa)
N-acetylglutamate synthase (EC:2.3.1.1)
N-acetylglutamate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00037BC65E
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5223..6077
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A8C73
ABC transporter periplasmic protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6074..7528
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1EB8
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7525..8703
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003676B1F
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8806..10452
DNA (1647bp) protein (549aa)
ABC transporter, ATP-binding protein id=1327204 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC transporter ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10449..11279
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000380E153
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11299..11775)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003689711
lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11784..12719)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372164F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1518_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12716..13942)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A18D4
phosphoribosylglycinamide synthetase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13949..15361)
DNA (1413bp) protein (471aa)
radical SAM protein id=12494286 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
radical SAM domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15371..15769)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E19D1
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1518_trna_1
unknown

Not on your lists

comp(15873..15946)
DNA (74bp)
transferRNA Arg
RTP_03222018_0_1um_scaffold_1518_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16122..16910
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037D6D5B
cytochrome c5
Probable cytochrome c5 {ECO:0000313|EMBL:AAZ96099.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1518_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16960..17535
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BAF6C
class I cytochrome c
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1518_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17764..18327
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F7943
Sel1 repeat-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1518_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18396..20294)
DNA (1899bp) protein (633aa)
Heavy metal translocating P-type ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK06_9BURK
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EHR70978.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Lead, cadmium, zinc and mercury transporting ATPase
RTP_03222018_0_1um_scaffold_1518_22
unknown

Not on your lists

comp(20291..20389)
DNA (99bp) protein (33aa)

This feature has no annotations

RTP_03222018_0_1um_scaffold_1518_23
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20556..20891)
DNA (336bp) protein (112aa)
Transmembrane anchor protein n=1 Tax=Psychrobacter sp. G RepID=S4YW69_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDS53348.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
transmembrane anchor protein
RTP_03222018_0_1um_scaffold_1518_24

Not on your lists

comp(21018..21140)
DNA (123bp) protein (41aa)
TISRso5 ISRSO5-transposase protein n=1 Tax=mine drainage metagenome RepID=T1BSI9_9ZZZZ
TISRso5 ISRSO5-transposase protein {ECO:0000313|EMBL:EQD27632.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ISBmu8 transposase
Displaying 25 items

View Taxonomy