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RTP_03222018_0_1um_scaffold_1614

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_1614_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..752
DNA (750bp) protein (250aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu, partial n=2 Tax=Thiobacillus denitrificans RepID=UPI000376B2A7
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


761..1069
DNA (309bp) protein (103aa)
rpsJ, nusE; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=12495324 bin=THIO_HI species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsJ; 30S ribosomal protein S10
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1195..1839
DNA (645bp) protein (215aa)
50S ribosomal protein L3 id=1308460 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
50S ribosomal protein L3P
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1839..2456
DNA (618bp) protein (206aa)
50S ribosomal protein L4 id=1308461 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rplD; 50S ribosomal protein L4
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2456..2761
DNA (306bp) protein (102aa)
50S ribosomal protein L23 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FEBD3
50S ribosomal protein L23
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2773..3600
DNA (828bp) protein (276aa)
50S ribosomal protein L2 id=1308463 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rplB; 50S ribosomal protein L2
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3616..3891
DNA (276bp) protein (92aa)
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 id=1308464 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3902..4231
DNA (330bp) protein (110aa)
50S ribosomal protein L22 n=1 Tax=Thiobacillus thioparus RepID=UPI00036065C3
50S ribosomal protein L22
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4241..4945
DNA (705bp) protein (235aa)
30S ribosomal protein S3 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS3_THIDA
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_1um_scaffold_1614_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4929..5345
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Thiobacillus thioparus RepID=UPI0003690D45
rplP; 50S ribosomal protein L16
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5349..5543
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Thiobacillus thioparus RepID=UPI00037A7A7A
50S ribosomal protein L29
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5540..5803
DNA (264bp) protein (88aa)
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=12495314 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsQ; 30S ribosomal protein S17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5988..6356
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=1336995 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rplN; 50S ribosomal protein L14
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6366..6689
DNA (324bp) protein (108aa)
50S ribosomal protein L24 id=1336996 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
50S ribosomal protein L24
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6692..7231
DNA (540bp) protein (180aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=12495311 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplE; 50S ribosomal protein L5
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7239..7544
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Thiobacillus denitrificans RepID=UPI000363AC1B
rpsN; 30S ribosomal protein S14
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7557..7952
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C8A
30S ribosomal protein S8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7966..8496
DNA (531bp) protein (177aa)
50S ribosomal protein L6 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003631E9D
rplF; 50S ribosomal protein L6
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8513..8866
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thiobacillus thioparus RepID=UPI000363996E
50S ribosomal protein L18
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8882..9400
DNA (519bp) protein (173aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=12495306 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsE; 30S ribosomal protein S5
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9404..9589
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL30_THIDA
rpmD; 50S ribosomal protein L30
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9590..10024
DNA (435bp) protein (145aa)
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=12495304 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L15
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10043..11356
DNA (1314bp) protein (438aa)
Protein translocase subunit SecY id=1337005 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secY; preprotein translocase subunit SecY
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11356..11574
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12498464 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
infA; translation initiation factor IF-1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11615..11728
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Limnobacter sp. MED105 RepID=A6GPH8_9BURK
50S ribosomal protein L36
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1614_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11818..12174
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=12495301 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsM; 30S ribosomal protein S13
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12184..12576
DNA (393bp) protein (131aa)
30S ribosomal protein S11 id=1337008 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
30S ribosomal protein S11
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12591..13220
DNA (630bp) protein (210aa)
30S ribosomal protein S4 id=1337009 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpsD; 30S ribosomal protein S4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1614_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13313..14077
DNA (765bp) protein (255aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=1337010 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1614_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14163..14552
DNA (390bp) protein (130aa)
50S ribosomal protein L17 n=1 Tax=Thiobacillus thioparus RepID=UPI00036728B3
50S ribosomal protein L17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 33 in total

View Taxonomy