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RTP_03222018_0_1um_scaffold_1631

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_1um_scaffold_1631_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195..464)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364E644
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1631_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(461..3025)
DNA (2565bp) protein (855aa)
DNA mismatch repair protein MutS n=1 Tax=Thiobacillus denitrificans RepID=UPI00037179EB
DNA mismatch repair protein MutS
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3045..3842)
DNA (798bp) protein (266aa)
inositol monophosphatase (EC:3.1.3.25)
inositol monophosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00038010B0
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..4655
DNA (756bp) protein (252aa)
RNA methyltransferase TrmH, group 1 id=1326623 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RNA methyltransferase TrmH
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1631_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4704..5462
DNA (759bp) protein (253aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJN7_THIDA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_1um_scaffold_1631_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5538..5999
DNA (462bp) protein (154aa)
DNA-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003699E20
BadM/Rrf2 family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1631_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6022..7230
DNA (1209bp) protein (403aa)
cysteine desulfurase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D0045
cysteine desulfurase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1631_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7253..7639
DNA (387bp) protein (129aa)
FeS cluster assembly scaffold IscU id=1326618 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scaffold protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_1um_scaffold_1631_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7643..7966
DNA (324bp) protein (108aa)
Iron-sulphur cluster assembly protein IscA id=1326617 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Iron-sulfur cluster assembly protein IscA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8133..8660
DNA (528bp) protein (176aa)
CoA-transferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037AD2AD
hscB; co-chaperone HscB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8666..10528
DNA (1863bp) protein (621aa)
Chaperone protein HscA homolog id=1326615 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hscA; chaperone protein HscA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10537..11340
DNA (804bp) protein (268aa)
Putative uncharacterized protein id=1326614 bin=GWE1_T_denit_62_9 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
protein of unknown function, family DUF3050
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11356..11694
DNA (339bp) protein (113aa)
ferredoxin, 2Fe-2S type; K04755 ferredoxin, 2Fe-2S id=12497191 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
(2Fe-2S)-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11696..11890
DNA (195bp) protein (65aa)
Putative uncharacterized protein id=1326612 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_1um_scaffold_1631_15
Pseudoalteromonas piscicida, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12101..13150)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI000369FAC9
SEFIR domain-containing protein {ECO:0000313|EMBL:KJY92307.1}; TaxID=43662 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas piscicida.;"
SEFIR domain-containing protein
RTP_03222018_0_1um_scaffold_1631_16
Dickeya solani, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13147..13539)
DNA (393bp) protein (131aa)
SEFIR domain protein n=1 Tax=Pectobacterium sp. (strain SCC3193) RepID=K4FSF9_PECSS
SEFIR domain protein
SEFIR domain-containing protein {ECO:0000313|EMBL:KHN50874.1}; TaxID=1089444 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya solani.;"
RTP_03222018_0_1um_scaffold_1631_17
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13622..14104)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI00036D54BA
Putative uncharacterized protein {ECO:0000313|EMBL:EGW20535.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Displaying 17 items

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