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RTP_03222018_0_2um_scaffold_1286

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_1286_1
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32..340
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3P1_AROAE
plasmid stabilization system protein
Tax=GWA2_Gallionellales_60_18_curated
RTP_03222018_0_2um_scaffold_1286_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

351..1277
DNA (927bp) protein (309aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037DFA4B
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_3
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1317..1733)
DNA (417bp) protein (139aa)
Fimbrial protein pilin id=1333523 bin=GWE1_T_denit_62_9 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=CG_Rhodof_04
RTP_03222018_0_2um_scaffold_1286_4
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1745..5314)
DNA (3570bp) protein (1190aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00034B1020
Pilus assembly protein PilY {ECO:0000313|EMBL:AKH39753.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
pilY1; type 4 fimbrial biogenesis protein PilY1
RTP_03222018_0_2um_scaffold_1286_5
unknown

Not on your lists

comp(5371..5652)
DNA (282bp) protein (94aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_1286_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5667..6203)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000362995D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_7
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6200..7273)
DNA (1074bp) protein (358aa)
Type IV pilus assembly protein PilW n=1 Tax=Thauera sp. 28 RepID=N6YG18_9RHOO
hypothetical protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_1286_8
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7270..7713)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370DFFE
Tfp pilus assembly protein PilV
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_1286_9
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7722..8237)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367D6D2
fimbrial pilin related signal peptide protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_1286_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8416..8937)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003781618
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9049..10131
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367EA8B
D-amino acid oxidase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10333..11259
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BB5B5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11238..12368
DNA (1131bp) protein (377aa)
glycosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D7C94
glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12467..13531)
DNA (1065bp) protein (355aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHR4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97822.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_1286_15
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13518..14333)
DNA (816bp) protein (272aa)
hypothetical protein id=12497904 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL71574.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
RTP_03222018_0_2um_scaffold_1286_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14487..15545
DNA (1059bp) protein (353aa)
glycosyltransferase (EC:2.4.1.-)
Glycosyl transferase, group 1 id=1345550 bin=GWE1_T_denit_62_9 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1286_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15698..16963
DNA (1266bp) protein (422aa)
Putative uncharacterized protein id=1345549 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1286_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17034..18638)
DNA (1605bp) protein (535aa)
Putative epimerase/dehydratase polysaccharide-related biosynthesis protein id=1345548 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
epimerase/dehydratase-like biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1286_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18628..19590)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003699106
undecaprenyl phosphate N-acetylglucosaminyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_20
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19821..20867)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B53AEC
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_03222018_0_2um_scaffold_1286_21
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21195..21569)
DNA (375bp) protein (125aa)
Transcriptional regulator, ArsR family n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SVP8_POLSQ
Transcriptional regulator {ECO:0000313|EMBL:GAO37554.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_1286_22
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21566..21898)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PTV6_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
RTP_03222018_0_2um_scaffold_1286_23
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22125..22514)
DNA (390bp) protein (130aa)
Plasmid stabilization system protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZY49_9RHOO
Plasmid stabilization system protein {ECO:0000313|EMBL:ENO97064.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
RTP_03222018_0_2um_scaffold_1286_24
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22515..22829)
DNA (315bp) protein (105aa)
Putative antitoxin, Prevent-host-death family protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P630_AROAE
antitoxin, prevent-host-death family protein
Putative antitoxin, Prevent-host-death family protein {ECO:0000313|EMBL:CAI07231.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
RTP_03222018_0_2um_scaffold_1286_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22968..23915)
DNA (948bp) protein (316aa)
Putative UDP-glucose 4-epimerase id=1345546 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
UDP-glucose 4-epimerase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23912..24661)
DNA (750bp) protein (250aa)
Putative uncharacterized protein id=1345545 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_1286_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24658..25464)
DNA (807bp) protein (269aa)
Glycosyltransferases involved in cell wall biogenesis-like protein id=1345544 bin=GWE1_T_denit_62_9 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Glycosyltransferases involved in cell wall biogenesis-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25461..26189)
DNA (729bp) protein (243aa)
Methyltransferase FkbM family id=1345543 bin=GWE1_T_denit_62_9 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Methyltransferase FkbM family
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26240..27196)
DNA (957bp) protein (319aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KCV0_CYAP7
NAD-dependent epimerase/dehydratase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_1286_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27210..28343)
DNA (1134bp) protein (378aa)
group 1 glycosyl transferase id=1345540 bin=GWE1_T_denit_62_9 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative Glycosyl transferase group 1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 39 in total

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