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RTP_03222018_0_2um_scaffold_4136

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_4136_1
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..85)
DNA (84bp) protein (28aa)
elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=3 Tax=Burkholderia multivorans RepID=B9BA60_9BURK
Elongation factor Tu {ECO:0000313|EMBL:EYS96714.1}; Flags: Fragment;; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
RTP_03222018_0_2um_scaffold_4136_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(109..2199)
DNA (2091bp) protein (697aa)
elongation factor G n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4BF9
translation elongation factor 2 (EF-2/EF-G)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_4136_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2231..2701)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Thiobacillus thioparus RepID=UPI0003610F4E
30S ribosomal protein S7
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2722..3099)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS12_THIDA
rpsL; 30S ribosomal protein S12
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3268..7467)
DNA (4200bp) protein (1400aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F6840
RTP_03222018_0_2um_scaffold_4136_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7489..11232)
DNA (3744bp) protein (1248aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=12495330 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11460..11834)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E9230
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_4136_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11902..12423)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=1 Tax=Thiobacillus thioparus RepID=UPI00037236CC
rplJ; 50S ribosomal protein L10
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12691..13386)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Thiobacillus denitrificans RepID=UPI000362A4D9
50S ribosomal protein L1
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13388..13819)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 id=1359003 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rplK; 50S ribosomal protein L11
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_4136_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13917..14477)
DNA (561bp) protein (187aa)
Transcription termination/antitermination protein NusG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF22_THIDA
transcription antitermination protein nusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_4136_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14480..14827)
DNA (348bp) protein (116aa)
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=12495336 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
secE; preprotein translocase subunit SecE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_4136_trna_1
unknown

Not on your lists

comp(14860..14932)
DNA (73bp)
transferRNA Trp
RTP_03222018_0_2um_scaffold_4136_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15003..15752)
DNA (750bp) protein (250aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu, partial n=2 Tax=Thiobacillus denitrificans RepID=UPI000376B2A7
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 14 items

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