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RTP_03222018_0_2um_scaffold_131

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_131_1
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50..775
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-602-C20 RepID=UPI0003682B2D
Transposase {ECO:0000313|EMBL:KHF25911.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
integrase catalytic subunit
RTP_03222018_0_2um_scaffold_131_2
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

907..1245
DNA (339bp) protein (113aa)
Putative transposase, IS3/IS911 family n=1 Tax=Variovorax paradoxus B4 RepID=T1XCN2_VARPD
Transposase {ECO:0000313|EMBL:KDP87038.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_131_3
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1242..2372
DNA (1131bp) protein (377aa)
Integrase core domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLG7_VARPD
Integrase {ECO:0000313|EMBL:EYS84620.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
putative transposase
RTP_03222018_0_2um_scaffold_131_4

Not on your lists

2369..2674
DNA (306bp) protein (102aa)
hypothetical protein, partial n=3 Tax=Thiobacillus denitrificans RepID=UPI0003776257
Marine sediment metagenome DNA, contig: S01H4_S12352 {ECO:0000313|EMBL:GAG93596.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase catalytic subunit
RTP_03222018_0_2um_scaffold_131_5
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2773..3042
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00037738CC
GtrA-like protein {ECO:0000313|EMBL:EXI86018.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
gtra family protein
RTP_03222018_0_2um_scaffold_131_6
Yersinia mollaretii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3327..6041
DNA (2715bp) protein (905aa)
Di-and tricarboxylate transporter n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4S7J3_YERMO
Di-and tricarboxylate transporter {ECO:0000313|EMBL:EEQ12393.1}; TaxID=349967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia mollaretii ATCC 43969.;"
RTP_03222018_0_2um_scaffold_131_7
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6318..9761
DNA (3444bp) protein (1148aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BZE6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESS71597.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
glycosyl transferase 2 family protein
RTP_03222018_0_2um_scaffold_131_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9786..10262
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000373A540
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29661.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_131_9
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10458..11432
DNA (975bp) protein (325aa)
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase {ECO:0000313|EMBL:ESS15123.1}; EC=2.4.1.289 {ECO:0000313|EMBL:ESS15123.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YJU9_9PROT
glycosyltransferase
RTP_03222018_0_2um_scaffold_131_10
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11429..12322
DNA (894bp) protein (298aa)
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase {ECO:0000313|EMBL:ESS15122.1}; EC=2.4.1.289 {ECO:0000313|EMBL:ESS15122.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YTY2_9PROT
glycosyl transferase family 2
RTP_03222018_0_2um_scaffold_131_11
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12600..13223
DNA (624bp) protein (208aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVT3_9GAMM
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EGW22940.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
epimerase
RTP_03222018_0_2um_scaffold_131_12
EBPR podovirus 1, Caudovirales, Viruses

Not on your lists

13274..13579
DNA (306bp) protein (102aa)
H-NS n=1 Tax=EBPR podovirus 1 RepID=F8TUP5_9CAUD
H-NS {ECO:0000313|EMBL:AEI70883.1}; TaxID=1048515 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae.;" source="EBPR podovirus 1.;"
histone family protein nucleoid-structuring protein H-NS
RTP_03222018_0_2um_scaffold_131_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14003..14281
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNT6_ACCPU
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
RTP_03222018_0_2um_scaffold_131_14
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14297..14776
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037D3E8D
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ACK78077.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
RTP_03222018_0_2um_scaffold_131_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15254..19765
DNA (4512bp) protein (1504aa)
Glutamate synthase large subunit {ECO:0000313|EMBL:AAZ98720.1}; EC=1.4.7.1 {ECO:0000313|EMBL:AAZ98720.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
gltB; glutamate synthase subunit alpha (EC:1.4.1.13)
glutamate synthase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00037776CE
RTP_03222018_0_2um_scaffold_131_16
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19777..19998
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Halomonas sp. A3H3 RepID=T2LAR3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDG54163.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_131_17
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

19995..20168
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002E81E71
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:AFZ61020.1}; TaxID=272123 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
RTP_03222018_0_2um_scaffold_131_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20262..21668
DNA (1407bp) protein (469aa)
gltD; glutamate synthase subunit beta (EC:1.4.1.13)
glutamate synthase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI00035FEFC7
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_131_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21747..23186
DNA (1440bp) protein (480aa)
signal transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366F092
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23135..23653
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003633130
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23650..25005
DNA (1356bp) protein (452aa)
Two Component Transcriptional Regulator, Fis family id=1343556 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Fis family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25167..25334
DNA (168bp) protein (56aa)
UPF0391 membrane protein Tbd_2772 id=1343555 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25635..25934
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1A3F
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_131_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25984..26280
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1A3F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98727.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_131_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26332..26823
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C1A3F
transport-associated
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26896..27237
DNA (342bp) protein (114aa)
Putative uncharacterized protein id=1343553 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27330..28484)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA3C6
transporter protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_131_28
unknown

Not on your lists

28948..29109
DNA (162bp) protein (54aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_131_29
unknown

Not on your lists

29387..29638
DNA (252bp) protein (84aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_131_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29685..30092
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686672
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98731.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 78 in total

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