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RTP_03222018_0_2um_scaffold_245

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_245_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

384..722
DNA (339bp) protein (113aa)
Arsenical resistance operon repressor id=1320301 bin=GWE1_T_denit_62_9 species=Collimonas fungivorans genus=Collimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ArsR family transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_245_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

719..1204
DNA (486bp) protein (162aa)
Glyoxalase/bleomycin resistance protein/dioxygenase id=1320302 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Glyoxalase/bleomycin resistance protein/dioxygenase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_245_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1234..1665
DNA (432bp) protein (144aa)
protein tyrosine phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI0003619D35
protein tyrosine phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_245_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1684..2181
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003661420
arsenate reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_245_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2178..3119
DNA (942bp) protein (314aa)
arsenic transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00037A6957
ACR3 family arsenite transporter
Putative arsenite transporter, ACR3 family {ECO:0000313|EMBL:AAZ97379.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_245_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3355..7287
DNA (3933bp) protein (1311aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FD01B
diguanylate cyclase/phosphodiesterase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_245_trna_3
unknown

Not on your lists

comp(7346..7416)
DNA (71bp)
transferRNA Thr
RTP_03222018_0_2um_scaffold_245_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7606..8994)
DNA (1389bp) protein (463aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=12494300 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_245_trna_1
unknown

Not on your lists

9104..9175
DNA (72bp)
transferRNA Val
RTP_03222018_0_2um_scaffold_245_8
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9256..9720)
DNA (465bp) protein (155aa)
DoxX family protein; K15977 putative oxidoreductase id=12497338 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DoxX family protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_245_9
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9797..10126)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Pseudomonas mendocina RepID=J7TKA5_PSEME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP84317.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
RTP_03222018_0_2um_scaffold_245_10
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10254..10499)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Neisseria shayeganii 871 RepID=G4CIX7_9NEIS
putative uncharacterized protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_245_11
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10739..11140)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Marinobacter lipolyticus RepID=UPI00036C1E69
Uncharacterized protein {ECO:0000313|EMBL:EAZ97809.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
ybeQ; hypothetical protein
RTP_03222018_0_2um_scaffold_245_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11313..13079)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z1E4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
RTP_03222018_0_2um_scaffold_245_13
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13174..13431)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F4L7_SORC5
Cell division protein BolA {ECO:0000313|EMBL:EYF06454.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_245_14
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13638..14279)
DNA (642bp) protein (214aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Massilia niastensis RepID=UPI0003706FB1
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_03222018_0_2um_scaffold_245_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14375..14935)
DNA (561bp) protein (187aa)
Nitrogen-fixing NifU-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB63_NITMU
Nitrogen fixation protein NifU {ECO:0000313|EMBL:KIO50197.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
nitrogen-fixing NifU-like
RTP_03222018_0_2um_scaffold_245_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14946..15431)
DNA (486bp) protein (162aa)
NifU-like protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AHH5_9PROT
SUF system FeS assembly protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
RTP_03222018_0_2um_scaffold_245_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15431..16687)
DNA (1257bp) protein (419aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Cysteine desulfurase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEW9_9PROT
SufS subfamily cysteine desulfurase
RTP_03222018_0_2um_scaffold_245_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16684..18024)
DNA (1341bp) protein (447aa)
Iron-sulfur cluster assembly protein SufD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFJ5_9PROT
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:KIO50500.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
FeS assembly protein SufD
RTP_03222018_0_2um_scaffold_245_19
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18021..18818)
DNA (798bp) protein (266aa)
Putative ATP-dependent transporter SufC n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YJM7_9PROT
Putative ATP-dependent transporter SufC {ECO:0000313|EMBL:ESS15073.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
FeS assembly ATPase SufC
RTP_03222018_0_2um_scaffold_245_20
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18815..20251)
DNA (1437bp) protein (479aa)
FeS cluster assembly protein SufB n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4Y3A7_9PROT
FeS cluster assembly protein SufB {ECO:0000313|EMBL:ESS15074.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
cysteine desulfurase activator complex subunit SufB
RTP_03222018_0_2um_scaffold_245_21
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20307..20657)
DNA (351bp) protein (117aa)
Iron-sulfur cluster assembly protein n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YPD6_9PROT
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:ESS15076.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
HesB/YadR/YfhF
RTP_03222018_0_2um_scaffold_245_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21284..22684
DNA (1401bp) protein (467aa)
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D14C6
DEAD/DEAH box helicase
RTP_03222018_0_2um_scaffold_245_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22775..24280
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ED88C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_245_24
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24398..25117)
DNA (720bp) protein (240aa)
RES domain protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLY6_9GAMM
RES domain-containing protein
Tax=CG_Mariprof_01
RTP_03222018_0_2um_scaffold_245_25
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25117..25512)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLY7_9GAMM
hypothetical protein
Tax=CG_Mariprof_01
RTP_03222018_0_2um_scaffold_245_26
unknown

Not on your lists

26897..27190
DNA (294bp) protein (98aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_245_27
unknown

Not on your lists

27369..27632
DNA (264bp) protein (88aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_245_28
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28108..29424)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000363201F
Protein HipA {ECO:0000313|EMBL:EBA00022.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
hypothetical protein
Displaying items 1-30 of 84 in total

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