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RTP_03222018_0_2um_scaffold_632

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_632_1
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

218..1180
DNA (963bp) protein (321aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367D1D4
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_03222018_0_2um_scaffold_632_2
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1177..1911
DNA (735bp) protein (245aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E738C
transcriptional acitvator, Baf
RTP_03222018_0_2um_scaffold_632_3
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1908..2558
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D4AD2
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78482.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_632_4
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2565..3422)
DNA (858bp) protein (286aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-)
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003646156
RTP_03222018_0_2um_scaffold_632_5
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3419..3817)
DNA (399bp) protein (133aa)
Probable chorismate pyruvate-lyase {ECO:0000256|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000256|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000256|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000256|HAMAP-Rule:MF_01632};; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
chorismate lyase (EC:4.1.3.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E09F4
RTP_03222018_0_2um_scaffold_632_6
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4026..6062)
DNA (2037bp) protein (679aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
RecG-like helicase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B1_9PROT
RecG-like helicase {ECO:0000313|EMBL:CAI78489.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_03222018_0_2um_scaffold_632_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6072..6452)
DNA (381bp) protein (127aa)
Putative translation initiation inhibitor id=1342766 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
endoribonuclease L-PSP
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_632_8
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6478..8697)
DNA (2220bp) protein (740aa)
metal dependent phosphohydrolase (EC:2.7.6.5)
guanosine-3'''',5''''-bis(diphosphate) 3''''-pyrophosphohydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036111A1
Guanosine polyphosphate pyrophosphohydrolase {ECO:0000313|EMBL:CAI78491.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_03222018_0_2um_scaffold_632_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8669..8872)
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase subunit omega id=1342769 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RNA polymerase, omega subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_632_10
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8902..9531)
DNA (630bp) protein (210aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A7_9PROT
RTP_03222018_0_2um_scaffold_632_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9550..10416)
DNA (867bp) protein (289aa)
stress-induced protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003820D8A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_632_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10654..11181
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A5_9PROT
Serine/threonine protein kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_632_13
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11191..12099
DNA (909bp) protein (303aa)
Serine/threonine protein phosphatase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A4_9PROT
Serine/threonine protein phosphatase {ECO:0000313|EMBL:CAI78496.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
Ser/Thr phosphatase
RTP_03222018_0_2um_scaffold_632_14
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12356..13084
DNA (729bp) protein (243aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RNAse PH (EC:2.7.7.56)
ribonuclease PH n=1 Tax=Thiobacillus thioparus RepID=UPI000377B2C9
RTP_03222018_0_2um_scaffold_632_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13081..13680
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLH9_THIDA
deoxyribonucleotide triphosphate pyrophosphatase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_16
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13637..14848
DNA (1212bp) protein (404aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinoben III oxidase and related Fe-S oxidoreductase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A1_9PROT
Coproporphyrinoben III oxidase and related Fe-S oxidoreductase {ECO:0000313|EMBL:CAI78499.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_03222018_0_2um_scaffold_632_17
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14869..16026)
DNA (1158bp) protein (386aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A0_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78500.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_03222018_0_2um_scaffold_632_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16095..17165
DNA (1071bp) protein (357aa)
selenophosphate synthetase (EC:2.7.9.3)
segregation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000372E793
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17166..18107
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z099_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_20

Not on your lists

18421..18822
DNA (402bp) protein (134aa)
Transcriptional regulator, XRE family n=1 Tax=mine drainage metagenome RepID=E6QT97_9ZZZZ
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CBI10469.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
helix-turn-helix domain-containing protein
RTP_03222018_0_2um_scaffold_632_21

Not on your lists

18864..20189
DNA (1326bp) protein (442aa)
Regulator with hipB n=1 Tax=mine drainage metagenome RepID=E6QT96_9ZZZZ
Regulator with hipB {ECO:0000313|EMBL:CBI10468.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
HipA N-terminal domain-containing protein
RTP_03222018_0_2um_scaffold_632_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20212..21615
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363A7A3
peptidase U32
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_23
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21678..22400)
DNA (723bp) protein (241aa)
S4 domain protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z096_9PROT
S4 domain protein {ECO:0000313|EMBL:CAI78504.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RNA-binding S4 domain-containing protein
RTP_03222018_0_2um_scaffold_632_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22547..22942)
DNA (396bp) protein (132aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23033..23803)
DNA (771bp) protein (257aa)
tRNA (Guanine37-N(1)-) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase id=1368684 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23814..24320)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RIMM_THIDA
16S rRNA-processing protein RimM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_632_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24350..24610)
DNA (261bp) protein (87aa)
30S ribosomal protein S16 id=1368682 bin=GWE1_T_denit_62_9 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ribosomal protein S16
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_632_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24697..26115)
DNA (1419bp) protein (473aa)
signal recognition particle protein Srp54 n=1 Tax=Thiobacillus thioparus RepID=UPI00036FA614
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_632_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26124..26909
DNA (786bp) protein (262aa)
Transmembrane protein id=1368680 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_632_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26921..28219
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D991B
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 47 in total

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