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RTP_03222018_0_2um_scaffold_741

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_741_1
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3..119
DNA (117bp) protein (39aa)
Transposase, IS116/IS110/IS902 family n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C2T1_ACAM1
IS116/IS110/IS902 family transposase
Transposase, IS116/IS110/IS902 family {ECO:0000313|EMBL:ABW30969.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
RTP_03222018_0_2um_scaffold_741_2
Legionella oakridgensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1424..1837
DNA (414bp) protein (138aa)
Uncharacterized protein n=4 Tax=Legionella pneumophila RepID=R9SGG1_LEGPN
Nucleotidyltransferase
Nucleotidyltransferase substrate binding protein, HI0074 family {ECO:0000313|EMBL:ETO94517.1}; TaxID=1274403 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella oakridgensis RV-2-2007.;"
RTP_03222018_0_2um_scaffold_741_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1845..2150
DNA (306bp) protein (102aa)
DNA polymerase, beta domain protein region n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAR6_GEOUR
DNA polymerase subunit beta
DNA polymerase, beta domain protein region {ECO:0000313|EMBL:ABQ25338.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
RTP_03222018_0_2um_scaffold_741_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2298..2501
DNA (204bp) protein (68aa)
hypothetical protein id=12498021 bin=THIO_MID species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2998..3846)
DNA (849bp) protein (283aa)
Putative uncharacterized protein id=1337896 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_741_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3866..5410)
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035DC737
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5524..6192
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367C2EC
TPR repeat-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6197..7156)
DNA (960bp) protein (320aa)
glycosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003735232
glycosyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7346..8125
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003641781
tRNA/rRNA methyltransferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8150..8452)
DNA (303bp) protein (101aa)
PhnO-like protein id=12498028 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
PhnO
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_741_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8537..10588)
DNA (2052bp) protein (684aa)
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) id=1370566 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_741_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10865..11638)
DNA (774bp) protein (258aa)
Putative phosphoenolpyruvate synthase regulatory protein id=1370567 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_741_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11650..13995
DNA (2346bp) protein (782aa)
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase id=1370568 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_741_14
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14108..14863
DNA (756bp) protein (252aa)
Putative CRP/FNR family transcriptional regulator n=1 Tax=Austwickia chelonae NBRC 105200 RepID=K6UL92_9MICO
Crp/Fnr family transcriptional regulator
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
RTP_03222018_0_2um_scaffold_741_15
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14906..15319)
DNA (414bp) protein (138aa)
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
RTP_03222018_0_2um_scaffold_741_16
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15334..17820)
DNA (2487bp) protein (829aa)
Putative anaerobic dehydrogenase n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A5Y0_DESDJ
anaerobic dehydrogenase
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
RTP_03222018_0_2um_scaffold_741_17
unknown

Not on your lists

comp(18138..18329)
DNA (192bp) protein (64aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_741_18
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18582..19211
DNA (630bp) protein (210aa)
heme exporter protein CcmA id=12494456 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heme exporter protein CcmA
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_19
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19382..19945
DNA (564bp) protein (188aa)
heme exporter protein CcmB id=12494455 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heme exporter protein CcmB
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_20
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19949..20683
DNA (735bp) protein (245aa)
heme exporter protein CcmC; K02195 heme exporter protein C id=12494454 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
heme exporter protein CcmC
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_21
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20680..20853
DNA (174bp) protein (58aa)
hypothetical protein; K02196 heme exporter protein D id=12494453 bin=THIO_HI species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ccmD; cytochrome c-type biogenesis protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_22
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20868..21314
DNA (447bp) protein (149aa)
cytochrome c-type biogenesis protein CcmE; K02197 cytochrome c-type biogenesis protein CcmE id=12494452 bin=THIO_HI species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ccmE; cytochrome c-type biogenesis protein CcmE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_03222018_0_2um_scaffold_741_23
unknown

Not on your lists

21311..21487
DNA (177bp) protein (59aa)

This feature has no annotations

RTP_03222018_0_2um_scaffold_741_24
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21500..23479
DNA (1980bp) protein (660aa)
ccmF_[H]; Cytochrome c heme lyase subunit CcmF id=12494451 bin=THIO_HI species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heme lyase subunit CcmF
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_25
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23483..24004
DNA (522bp) protein (174aa)
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase id=12494450 bin=THIO_HI species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_26
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24001..24480
DNA (480bp) protein (160aa)
cytochrome C biogenesis protein id=12494449 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome C biogenesis protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_27
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24477..25778
DNA (1302bp) protein (434aa)
cycH_[H]; Cytochrome c heme lyase subunit CcmH id=12494448 bin=THIO_HI species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Hydro_01
RTP_03222018_0_2um_scaffold_741_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25865..27520
DNA (1656bp) protein (552aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000255|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000255|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000255|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000255|HAMAP-Rule:MF_01227}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
CTP synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI00037194AE
RTP_03222018_0_2um_scaffold_741_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27517..28359
DNA (843bp) protein (281aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase id=1375315 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_741_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28402..29685
DNA (1284bp) protein (428aa)
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase id=1375314 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 112 in total

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