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RTP_03222018_0_2um_scaffold_883

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_03222018_0_2um_scaffold_883_1
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..144)
DNA (144bp) protein (48aa)
Transcriptional regulator, CopG family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WKL6_VEREI
CopG family transcriptional regulator
Transcriptional regulator, CopG family {ECO:0000313|EMBL:ABM58173.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
RTP_03222018_0_2um_scaffold_883_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(262..699)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D5011
FKBP-type peptidyl-prolyl cis-trans isomerase 2
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(696..1196)
DNA (501bp) protein (167aa)
signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase id=1333519 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1189..4038)
DNA (2850bp) protein (950aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
isoleucyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI000382B0EE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_883_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4051..4995)
DNA (945bp) protein (315aa)
FMN adenylyltransferase / riboflavin kinase (EC:2.7.1.26 2.7.7.2)
FMN adenylyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036EF1A5
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5106..6644)
DNA (1539bp) protein (513aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A6EEC
virulence factor MVIN-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6863..7126
DNA (264bp) protein (88aa)
30S ribosomal protein S20P; K02968 small subunit ribosomal protein S20 id=12494093 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
30S ribosomal protein S20
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_883_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7222..7503)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003716284
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7674..7769
DNA (96bp) protein (32aa)
Putative uncharacterized protein id=1342214 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7783..8283
DNA (501bp) protein (167aa)
Putative uncharacterized protein id=1342213 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8389..9570
DNA (1182bp) protein (394aa)
acetylornithine aminotransferase (EC:2.6.1.11)
acetylornithine aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000376449C
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9570..10487
DNA (918bp) protein (306aa)
ornithine carbamoyltransferase (EC:2.1.3.3) id=12494096 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ornithine carbamoyltransferase (EC:2.1.3.3)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10490..10729
DNA (240bp) protein (80aa)
Putative uncharacterized protein id=1342210 bin=GWE1_T_denit_62_9 species=Cyanobacterium aponinum genus=Cyanobacterium taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10740..11963
DNA (1224bp) protein (408aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
argininosuccinate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000360AE62
RTP_03222018_0_2um_scaffold_883_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11991..12305
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360248F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12309..12884
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F0EC5
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12889..13374
DNA (486bp) protein (162aa)
nucleotide-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ECB09
nucleotide-binding protein
UPF0234 protein Tbd_1846 {ECO:0000255|HAMAP-Rule:MF_00632}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_03222018_0_2um_scaffold_883_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13390..13935
DNA (546bp) protein (182aa)
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E3486
protease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14014..14448
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379FC09
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14464..14967)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378ABD2
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15001..15879)
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA id=1354805 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GTPase EngC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15883..16224)
DNA (342bp) protein (114aa)
pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D947B
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_883_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16234..16542)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382901A
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16658..17206
DNA (549bp) protein (183aa)
oligoribonuclease n=1 Tax=Thiobacillus thioparus RepID=UPI0003641A7E
oligoribonuclease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17334..17792)
DNA (459bp) protein (153aa)
signal peptide protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AE646
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_03222018_0_2um_scaffold_883_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17905..18486
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003676BB9
sigma-24 (FecI)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18483..19214
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036057E1
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19201..21003
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BBAF2
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_03222018_0_2um_scaffold_883_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21013..22179)
DNA (1167bp) protein (389aa)
Putative protease id=1331290 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
protease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_03222018_0_2um_scaffold_883_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22193..22780
DNA (588bp) protein (196aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2)
Ubiquinol-cytochrome c reductase iron-sulfur subunit id=1331291 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 37 in total

View Taxonomy