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RTP_082018_0_1um_scaffold_4528

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_4528_1
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(232..2001)
DNA (1770bp) protein (590aa)
Modification methylase NspV id=2225838 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
modification methylase NspV
Tax=GWA2_Bacteroidetes_32_17_curated
RTP_082018_0_1um_scaffold_4528_2
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2001..2678)
DNA (678bp) protein (226aa)
Putative uncharacterized protein id=2225839 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
restriction endonuclease NspV
Tax=GWA2_Bacteroidetes_32_17_curated
RTP_082018_0_1um_scaffold_4528_trna_1
unknown

Not on your lists

comp(3917..3990)
DNA (74bp)
transferRNA Met
RTP_082018_0_1um_scaffold_4528_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(4029..5918)
DNA (1890bp) protein (630aa)
Pyruvate dehydrogenase (Acetyl-transferring), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL5_NIAKG
Pyruvate dehydrogenase (acetyl-transferring), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(5918..6919)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BFCB3
peptidyl-tRNA hydrolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

7015..8292
DNA (1278bp) protein (426aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTP0_9SPHI
sensory box sensor histidine kinase/response regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(8377..9696)
DNA (1320bp) protein (440aa)
Ribose-phosphate pyrophosphokinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLL0_NIAKG
ribose-phosphate pyrophosphokinase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

9771..10460
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037DE05A
DNA repair protein RadC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_8
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10665..11678)
DNA (1014bp) protein (338aa)
Adenosine deaminase n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EQJ9_EMTOG
Adenosine deaminase
Adenosine deaminase {ECO:0000313|EMBL:AFK01952.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
RTP_082018_0_1um_scaffold_4528_9
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11774..12340
DNA (567bp) protein (189aa)
Transcriptional regulator Crp/Fnr family protein n=2 Tax=Elizabethkingia anophelis RepID=H0KN58_9FLAO
Crp/Fnr family transcription regulator {ECO:0000313|EMBL:AKH94235.1}; TaxID=1352940 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica FMS-007.;"
DNA-binding transcriptional activator YeiL
RTP_082018_0_1um_scaffold_4528_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12636..12944)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036834C2
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13060..14502)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTI4_HALH1
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(14521..17658)
DNA (3138bp) protein (1046aa)
TonB-dependent receptor plug n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KTI3_HALH1
TonB-dependent receptor plug
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

17786..18664
DNA (879bp) protein (293aa)
Bifunctional protein FolD n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLJ9_NIAKG
bifunctional protein folD
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

18664..19284
DNA (621bp) protein (207aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLJ8_NIAKG
radical SAM protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19401..21482
DNA (2082bp) protein (694aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI0003658884
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

21491..22141
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K8M7_9BACT
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

22246..24162
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000378476E
OmpA/MotB domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

24219..25301
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381D154
DNA processing protein DprA
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_4528_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25270..26355)
DNA (1086bp) protein (362aa)
Major facilitator superfamily MFS_1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJW2_CHIPD
major facilitator superfamily protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 20 items

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