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RTP_082018_0_1um_scaffold_1836

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_082018_0_1um_scaffold_1836_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

3..278
DNA (276bp) protein (92aa)
GntR domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y411_PEDHD
GntR family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(398..625)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003786CD4
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(728..6208)
DNA (5481bp) protein (1827aa)
Secreted protein containing hyalin domain n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M2G1_GRAFK
hyalin domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(6370..10365)
DNA (3996bp) protein (1332aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI0003762680
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_trna_1
unknown

Not on your lists

comp(10582..10668)
DNA (87bp)
transferRNA Ser
RTP_082018_0_1um_scaffold_1836_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10710..11492)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003605CF0
TatD family hydrolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(11634..12143)
DNA (510bp) protein (170aa)
Polysaccharide deacetylase n=1 Tax=Niabella soli DSM 19437 RepID=H1NTS3_9SPHI
putative xylanase/chitin deacetylase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

12155..13702
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036ACF56
glutamyl-tRNA synthetase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_8
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13712..14119
DNA (408bp) protein (136aa)
Methylmalonyl-CoA mutase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW0_NIAKG
Methylmalonyl-CoA mutase domain protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14146..14925
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037054F2
Enoyl-CoA hydratase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14963..16363
DNA (1401bp) protein (467aa)
fumarate hydratase n=1 Tax=Segetibacter koreensis RepID=UPI00035ECE06
class II fumarate hydratase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(16521..17423)
DNA (903bp) protein (301aa)
Transcriptional regulator, AraC family n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSE9_9FLAO
AraC family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(17446..18261)
DNA (816bp) protein (272aa)
Probable short-chain type dehydrogenase n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z370_FLABF
putative short-chain type dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(18578..20200)
DNA (1623bp) protein (541aa)
amidohydrolase n=1 Tax=Niabella aurantiaca RepID=UPI000364A335
amidohydrolase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(20210..21466)
DNA (1257bp) protein (419aa)
ATP-binding protein, P-loop_NTPAse superfamily id=3081206 bin=GWA2_Bacteroidetes_42_15 species=unknown genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
ATP-binding protein, P-loop_NTPAse superfamily
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(21479..22156)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000379BCD2
signal peptidase II
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_16
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(22202..24145)
DNA (1944bp) protein (648aa)
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(24185..24784)
DNA (600bp) protein (200aa)
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

24929..25855
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0002D6A494
Tetratricopeptide TPR_2 repeat-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(25856..28351)
DNA (2496bp) protein (832aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AE4E5
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(28357..29364)
DNA (1008bp) protein (336aa)
Integral membrane protein, TerC family n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ58_9SPHI
tellurium resistance protein TerC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(29380..31839)
DNA (2460bp) protein (820aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C0B10
ABC transporter substrate-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(31920..32276)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C88BE
iron-sulfur cluster assembly accessory protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32294..32710)
DNA (417bp) protein (139aa)
FeS cluster assembly scaffold IscU n=1 Tax=Segetibacter koreensis RepID=UPI000380C7E8
iron-sulfur cluster assembly protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
RTP_082018_0_1um_scaffold_1836_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32774..32893)
DNA (120bp) protein (40aa)
cysteine desulfurase n=1 Tax=Hymenobacter aerophilus RepID=UPI00037D01CD
cysteine desulfurase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 25 items

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