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FFSP_062018_mid_0_1um_scaffold_354

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_062018_mid_0_1um_scaffold_354_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..116
DNA (114bp) protein (38aa)
Transcription elongation factor GreA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJR8_THIDA
GreA/GreB family elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_062018_mid_0_1um_scaffold_354_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120..578
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035EA730
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(594..890)
DNA (297bp) protein (99aa)
Putative uncharacterized protein id=1326655 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

932..1609
DNA (678bp) protein (226aa)
Ribosomal RNA large subunit methyltransferase E id=1326654 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cell division protein FtsJ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1675..3567
DNA (1893bp) protein (631aa)
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH id=1326653 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3633..4460
DNA (828bp) protein (276aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase id=1326652 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4463..5827
DNA (1365bp) protein (455aa)
phosphoglucosamine mutase (EC:5.4.2.10)
phosphoglucosamine mutase n=1 Tax=Thiobacillus thioparus RepID=UPI000365C22E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5932..6951
DNA (1020bp) protein (340aa)
Periplasmic phosphate binding protein id=1326650 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic phosphate binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7060..8037
DNA (978bp) protein (326aa)
phosphate transporter permease subunit PstC n=1 Tax=Thiobacillus thioparus RepID=UPI0003751CA7
phosphate ABC transporter permease PstC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8040..8885
DNA (846bp) protein (282aa)
Phosphate transport system permease protein 2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJQ9_THIDA
phosphate transport system permease 2
Phosphate transport system permease protein 2 {ECO:0000313|EMBL:AAZ97091.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_062018_mid_0_1um_scaffold_354_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8919..9710
DNA (792bp) protein (264aa)
phosphate ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364B153
phosphate transport system permease 1
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_062018_mid_0_1um_scaffold_354_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9795..10541
DNA (747bp) protein (249aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=1326644 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10554..10892
DNA (339bp) protein (113aa)
Preprotein translocase SecG subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJQ6_THIDA
secG; preprotein translocase subunit SecG
Preprotein translocase SecG subunit {ECO:0000313|EMBL:AAZ97094.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_062018_mid_0_1um_scaffold_354_trna_1
unknown

Not on your lists

10948..11029
DNA (82bp)
transferRNA Leu
FFSP_062018_mid_0_1um_scaffold_354_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11187..11543
DNA (357bp) protein (119aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CFBB6
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11662..12138
DNA (477bp) protein (159aa)
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B 2 id=1326641 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_062018_mid_0_1um_scaffold_354_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12145..12747
DNA (603bp) protein (201aa)
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3)
NADH dehydrogenase subunit C n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6749
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12749..14002
DNA (1254bp) protein (418aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH dehydrogenase subunit D n=1 Tax=Thiobacillus thioparus RepID=UPI000382DA3E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14002..14505
DNA (504bp) protein (168aa)
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3)
NADH dehydrogenase I chain E id=1326638 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14502..15782
DNA (1281bp) protein (427aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] id=12497214 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_062018_mid_0_1um_scaffold_354_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15809..17371
DNA (1563bp) protein (521aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH dehydrogenase subunit G n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5707
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 21 items

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