ggKbase home page

FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 551-600 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_12063
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1150 bp 66.17 21.52 92.09
FFSP_062018_mid_0_1um_scaffold_10415
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1301 bp 65.56 16.49 93.39
FFSP_062018_mid_0_1um_scaffold_2686
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 4327 bp 61.59 26.14 89.92
FFSP_062018_mid_0_1um_scaffold_8471
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1546 bp 59.31 27.75 96.25
FFSP_062018_mid_0_1um_scaffold_8983
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1471 bp 53.03 18.56 94.43
FFSP_062018_mid_0_1um_scaffold_13670
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1042 bp 68.33 19.29 80.04
FFSP_062018_mid_0_1um_scaffold_5400
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2291 bp 67.26 18.66 91.66
FFSP_062018_mid_0_1um_scaffold_4903
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2508 bp 62.52 22.97 83.49
FFSP_062018_mid_0_1um_scaffold_6540
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1926 bp 62.10 15.26 94.70
FFSP_062018_mid_0_1um_scaffold_14212
Species: Thiobacillus denitrificans (50%)
2 1011 bp 64.19 18.10 98.52
FFSP_062018_mid_0_1um_scaffold_7103
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1791 bp 66.95 21.61 84.42
FFSP_062018_mid_0_1um_scaffold_8224
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1581 bp 59.27 20.49 92.22
FFSP_062018_mid_0_1um_scaffold_13423
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1056 bp 62.31 18.61 78.69
FFSP_062018_mid_0_1um_scaffold_7621
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1687 bp 59.75 21.87 93.89
FFSP_062018_mid_0_1um_scaffold_9062
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1460 bp 53.97 25.27 94.93
FFSP_062018_mid_0_1um_scaffold_6040
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2073 bp 63.19 25.47 92.91
FFSP_062018_mid_0_1um_scaffold_3720
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3249 bp 64.88 26.50 99.91
FFSP_062018_mid_0_1um_scaffold_13175
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1072 bp 58.40 23.51 87.87
FFSP_062018_mid_0_1um_scaffold_6557
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1923 bp 64.59 22.93 99.06
FFSP_062018_mid_0_1um_scaffold_12350
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1129 bp 62.62 25.24 98.32
FFSP_062018_mid_0_1um_scaffold_3217
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 3693 bp 62.06 23.56 87.00
FFSP_062018_mid_0_1um_scaffold_9331
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1427 bp 61.39 26.07 99.23
FFSP_062018_mid_0_1um_scaffold_12357
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1129 bp 57.66 16.47 98.85
FFSP_062018_mid_0_1um_scaffold_10454
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1296 bp 64.58 16.20 100.23
FFSP_062018_mid_0_1um_scaffold_8249
Species: Thiobacillus denitrificans (50%)
2 1578 bp 63.18 12.93 73.57
FFSP_062018_mid_0_1um_scaffold_7642
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1682 bp 57.31 26.93 95.24
FFSP_062018_mid_0_1um_scaffold_13193
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1071 bp 65.83 24.37 100.00
FFSP_062018_mid_0_1um_scaffold_13194
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1071 bp 67.69 16.81 99.72
FFSP_062018_mid_0_1um_scaffold_7900
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1637 bp 60.90 18.78 100.06
FFSP_062018_mid_0_1um_scaffold_8765
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1502 bp 65.51 19.67 100.27
FFSP_062018_mid_0_1um_scaffold_5694
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 2187 bp 62.83 27.57 99.45
FFSP_062018_mid_0_1um_scaffold_8254
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1577 bp 60.62 22.73 99.30
FFSP_062018_mid_0_1um_scaffold_12113
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1147 bp 66.61 19.35 100.17
FFSP_062018_mid_0_1um_scaffold_3747
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3226 bp 64.82 26.78 98.57
FFSP_062018_mid_0_1um_scaffold_13458
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1054 bp 65.56 18.64 100.19
FFSP_062018_mid_0_1um_scaffold_8772
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1501 bp 62.16 17.19 83.74
FFSP_062018_mid_0_1um_scaffold_13971
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1024 bp 63.96 20.21 98.73
FFSP_062018_mid_0_1um_scaffold_12117
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1147 bp 61.81 18.18 87.62
FFSP_062018_mid_0_1um_scaffold_7141
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1783 bp 63.60 20.86 83.96
FFSP_062018_mid_0_1um_scaffold_6582
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1917 bp 61.40 21.91 95.31
FFSP_062018_mid_0_1um_scaffold_6583
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1917 bp 60.62 16.90 83.88
FFSP_062018_mid_0_1um_scaffold_6076
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2060 bp 58.45 25.85 79.37
FFSP_062018_mid_0_1um_scaffold_7663
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1678 bp 60.07 20.65 79.92
FFSP_062018_mid_0_1um_scaffold_9104
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1455 bp 66.05 22.27 92.16
FFSP_062018_mid_0_1um_scaffold_12897
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1092 bp 63.64 16.21 77.47
FFSP_062018_mid_0_1um_scaffold_8530
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1537 bp 67.01 22.84 98.37
FFSP_062018_mid_0_1um_scaffold_4450
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2750 bp 65.49 20.84 98.73
FFSP_062018_mid_0_1um_scaffold_9112
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1453 bp 63.73 25.19 100.76
FFSP_062018_mid_0_1um_scaffold_9880
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1358 bp 60.82 24.30 81.74
FFSP_062018_mid_0_1um_scaffold_11921
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1162 bp 60.50 20.91 99.14
Displaying items 551-600 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.