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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 51-100 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_8626
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1522 bp 58.15 17.94 100.13
FFSP_062018_mid_0_1um_scaffold_8126
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1597 bp 65.50 20.29 100.13
FFSP_062018_mid_0_1um_scaffold_1827
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 6038 bp 59.64 21.51 100.12
FFSP_062018_mid_0_1um_scaffold_4707
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2601 bp 64.48 23.64 100.12
FFSP_062018_mid_0_1um_scaffold_4489
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2730 bp 63.33 22.75 100.11
FFSP_062018_mid_0_1um_scaffold_6893
Species: Thiobacillus denitrificans (50%)
2 1840 bp 67.23 23.80 100.11
FFSP_062018_mid_0_1um_scaffold_13591
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1046 bp 62.24 22.37 100.10
FFSP_062018_mid_0_1um_scaffold_5106
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2431 bp 60.14 21.60 100.08
FFSP_062018_mid_0_1um_scaffold_9639
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1385 bp 69.24 15.92 100.07
FFSP_062018_mid_0_1um_scaffold_7900
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1637 bp 60.90 18.78 100.06
FFSP_062018_mid_0_1um_scaffold_7427
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1727 bp 64.85 20.32 100.06
FFSP_062018_mid_0_1um_scaffold_6778
Species: Thiobacillus denitrificans (50%)
2 1872 bp 64.53 29.49 100.00
FFSP_062018_mid_0_1um_scaffold_13193
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1071 bp 65.83 24.37 100.00
FFSP_062018_mid_0_1um_scaffold_4532
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2706 bp 65.30 20.62 100.00
FFSP_062018_mid_0_1um_scaffold_12486
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1119 bp 61.93 18.50 100.00
FFSP_062018_mid_0_1um_scaffold_6476
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1944 bp 63.37 21.14 100.00
FFSP_062018_mid_0_1um_scaffold_10123
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1332 bp 65.17 21.17 100.00
FFSP_062018_mid_0_1um_scaffold_13893
Species: Thiobacillus denitrificans (100%)
1 1029 bp 66.18 17.78 100.00
FFSP_062018_mid_0_1um_scaffold_12048
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1152 bp 60.50 23.70 100.00
FFSP_062018_mid_0_1um_scaffold_4062
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3001 bp 61.11 25.79 99.97
FFSP_062018_mid_0_1um_scaffold_6625
Species: Thiobacillus denitrificans (100%)
1 1906 bp 61.75 20.93 99.95
FFSP_062018_mid_0_1um_scaffold_7370
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1738 bp 63.06 22.61 99.94
FFSP_062018_mid_0_1um_scaffold_7489
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1714 bp 59.68 17.68 99.94
FFSP_062018_mid_0_1um_scaffold_8372
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1561 bp 60.86 26.23 99.94
FFSP_062018_mid_0_1um_scaffold_4040
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3020 bp 63.44 20.12 99.93
FFSP_062018_mid_0_1um_scaffold_9275
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1432 bp 64.94 19.27 99.93
FFSP_062018_mid_0_1um_scaffold_4301
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2828 bp 62.73 18.56 99.93
FFSP_062018_mid_0_1um_scaffold_10374
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1306 bp 62.71 13.21 99.92
FFSP_062018_mid_0_1um_scaffold_10473
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1294 bp 66.69 14.14 99.92
FFSP_062018_mid_0_1um_scaffold_12069
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1150 bp 68.09 19.17 99.91
FFSP_062018_mid_0_1um_scaffold_12737
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1102 bp 67.88 19.06 99.91
FFSP_062018_mid_0_1um_scaffold_12929
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1090 bp 61.28 16.79 99.91
FFSP_062018_mid_0_1um_scaffold_3720
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3249 bp 64.88 26.50 99.91
FFSP_062018_mid_0_1um_scaffold_14079
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1018 bp 60.71 17.98 99.90
FFSP_062018_mid_0_1um_scaffold_14081
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1018 bp 61.98 21.22 99.90
FFSP_062018_mid_0_1um_scaffold_4520
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2715 bp 65.60 19.56 99.89
FFSP_062018_mid_0_1um_scaffold_7313
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1751 bp 68.13 19.45 99.89
FFSP_062018_mid_0_1um_scaffold_7581
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1694 bp 65.70 23.82 99.88
FFSP_062018_mid_0_1um_scaffold_8300
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1571 bp 64.35 21.01 99.87
FFSP_062018_mid_0_1um_scaffold_8486
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1544 bp 56.74 14.18 99.87
FFSP_062018_mid_0_1um_scaffold_8673
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1514 bp 62.09 17.83 99.87
FFSP_062018_mid_0_1um_scaffold_9245
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1436 bp 62.67 19.32 99.86
FFSP_062018_mid_0_1um_scaffold_9428
Species: Thiobacillus denitrificans (100%)
1 1415 bp 63.53 17.81 99.86
FFSP_062018_mid_0_1um_scaffold_5893
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2121 bp 65.11 20.23 99.86
FFSP_062018_mid_0_1um_scaffold_9776
Species: Thiobacillus denitrificans (100%)
1 1370 bp 63.87 24.31 99.85
FFSP_062018_mid_0_1um_scaffold_3512
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3419 bp 60.78 26.15 99.85
FFSP_062018_mid_0_1um_scaffold_10857
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1256 bp 64.73 26.04 99.84
FFSP_062018_mid_0_1um_scaffold_6781
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1872 bp 65.54 19.55 99.84
FFSP_062018_mid_0_1um_scaffold_11126
Species: Thiobacillus denitrificans (100%)
1 1232 bp 66.80 14.37 99.84
FFSP_062018_mid_0_1um_scaffold_5040
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2455 bp 64.56 24.87 99.84
Displaying items 51-100 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.