ggKbase home page

FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 151-200 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_3852
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 3151 bp 61.19 21.71 84.35
FFSP_062018_mid_0_1um_scaffold_1772
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 6162 bp 51.95 22.78 94.22
FFSP_062018_mid_0_1um_scaffold_5296
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 2337 bp 58.88 25.35 77.92
FFSP_062018_mid_0_1um_scaffold_2079
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 5420 bp 61.90 24.05 92.27
FFSP_062018_mid_0_1um_scaffold_3094
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 3811 bp 60.17 26.02 94.23
FFSP_062018_mid_0_1um_scaffold_2863
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 4099 bp 58.26 23.86 99.54
FFSP_062018_mid_0_1um_scaffold_2356
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 4868 bp 64.98 21.75 93.67
FFSP_062018_mid_0_1um_scaffold_2365
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4854 bp 60.75 24.72 78.92
FFSP_062018_mid_0_1um_scaffold_4577
Order: Hydrogenophilales (50%)
6 2679 bp 58.34 18.14 89.36
FFSP_062018_mid_0_1um_scaffold_2627
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4405 bp 61.25 19.48 87.58
FFSP_062018_mid_0_1um_scaffold_2884
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 4064 bp 64.15 25.65 95.30
FFSP_062018_mid_0_1um_scaffold_2632
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 4398 bp 64.76 22.37 89.36
FFSP_062018_mid_0_1um_scaffold_2378
Order: Hydrogenophilales (50%)
6 4832 bp 62.23 20.15 92.38
FFSP_062018_mid_0_1um_scaffold_5085
Order: Hydrogenophilales (66.67%)
6 2438 bp 59.06 18.21 89.34
FFSP_062018_mid_0_1um_scaffold_1827
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (83.33%)
6 6038 bp 59.64 21.51 100.12
FFSP_062018_mid_0_1um_scaffold_1326
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 7591 bp 64.68 23.99 96.94
FFSP_062018_mid_0_1um_scaffold_3156
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 3752 bp 63.81 23.47 92.67
FFSP_062018_mid_0_1um_scaffold_4101
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2968 bp 59.37 24.36 86.12
FFSP_062018_mid_0_1um_scaffold_2664
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
6 4353 bp 61.31 22.81 96.07
FFSP_062018_mid_0_1um_scaffold_3931
Order: Hydrogenophilales (66.67%)
6 3099 bp 63.92 21.78 82.96
FFSP_062018_mid_0_1um_scaffold_3437
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3489 bp 64.72 21.84 93.12
FFSP_062018_mid_0_1um_scaffold_1879
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5888 bp 63.35 22.06 97.47
FFSP_062018_mid_0_1um_scaffold_2695
Order: Hydrogenophilales (80%)
5 4319 bp 61.13 23.41 96.83
FFSP_062018_mid_0_1um_scaffold_5913
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2115 bp 58.49 23.55 93.90
FFSP_062018_mid_0_1um_scaffold_4137
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2948 bp 52.58 16.33 83.24
FFSP_062018_mid_0_1um_scaffold_2698
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4311 bp 56.18 21.78 91.44
FFSP_062018_mid_0_1um_scaffold_9314
Order: Hydrogenophilales (60%)
5 1428 bp 54.90 16.70 75.42
FFSP_062018_mid_0_1um_scaffold_1892
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5865 bp 64.88 24.65 95.40
FFSP_062018_mid_0_1um_scaffold_3719
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3250 bp 57.75 13.80 99.14
FFSP_062018_mid_0_1um_scaffold_3216
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 3694 bp 65.35 27.37 98.19
FFSP_062018_mid_0_1um_scaffold_3478
Order: Hydrogenophilales (60%)
5 3452 bp 60.69 19.29 92.12
FFSP_062018_mid_0_1um_scaffold_2214
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5127 bp 60.05 26.24 95.96
FFSP_062018_mid_0_1um_scaffold_1150
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 8369 bp 55.98 28.50 95.82
FFSP_062018_mid_0_1um_scaffold_2740
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 4254 bp 64.79 21.51 96.69
FFSP_062018_mid_0_1um_scaffold_2231
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5092 bp 61.29 28.16 78.36
FFSP_062018_mid_0_1um_scaffold_3764
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3212 bp 62.89 26.71 88.36
FFSP_062018_mid_0_1um_scaffold_4707
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2601 bp 64.48 23.64 100.12
FFSP_062018_mid_0_1um_scaffold_4198
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2893 bp 62.56 21.47 75.39
FFSP_062018_mid_0_1um_scaffold_2509
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4597 bp 60.39 23.07 91.17
FFSP_062018_mid_0_1um_scaffold_3014
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3918 bp 66.72 23.74 100.23
FFSP_062018_mid_0_1um_scaffold_3019
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 3913 bp 67.06 21.62 99.21
FFSP_062018_mid_0_1um_scaffold_4226
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 2875 bp 64.31 23.90 93.91
FFSP_062018_mid_0_1um_scaffold_5748
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 2170 bp 60.92 25.44 87.10
FFSP_062018_mid_0_1um_scaffold_5493
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 2261 bp 59.58 20.83 95.40
FFSP_062018_mid_0_1um_scaffold_3544
Order: Hydrogenophilales (60%)
5 3393 bp 66.37 17.90 94.52
FFSP_062018_mid_0_1um_scaffold_2282
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 4986 bp 63.46 20.52 96.63
FFSP_062018_mid_0_1um_scaffold_6892
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 1840 bp 64.57 25.43 96.68
FFSP_062018_mid_0_1um_scaffold_2283
Order: Hydrogenophilales (60%)
5 4985 bp 63.69 26.12 92.02
FFSP_062018_mid_0_1um_scaffold_3815
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
5 3180 bp 65.63 20.66 98.21
FFSP_062018_mid_0_1um_scaffold_2295
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 4967 bp 62.96 23.19 88.00
Displaying items 151-200 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.